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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Low
Inner nuclear layer:
Medium
Inner plexiform layer:
Medium
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
High
Pigment epithelial cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
139.9
nTPM
GTEx:
139.9
nTPM
FANTOM5:
484.3
Scaled Tags Per Million
Pig:
266.2
nTPM
Mouse:
398.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA016488
Pigment epithelial cells
High
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
Medium
Ganglion cells
Low
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 139.9
Samples: 105
Max nTPM: 415.3
Min nTPM: 22.8
Std nTPM: 77.8
Median nTPM:
43_1
64 years, female
415.3
6_1
73 years, female
357.1
217_1
76 years, male
341.2
137_1
83 years, male
333.0
35_1
74 years, female
294.2
153_1
70 years, female
288.9
142_1
61 years, female
279.9
81_1
67 years, male
278.9
126_1
63 years, male
273.5
139_1
64 years, female
261.9
32_1
67 years, male
261.6
286_1
68 years, female
245.8
518_1
75 years, female
244.8
145_1
84 years, male
234.2
2_1
77 years, female
233.2
17_1
71 years, male
227.7
149_1
88 years, male
221.3
466_1
57 years, female
217.5
117_1
61 years, male
212.2
9_1
66 years, female
206.5
229_1
69 years, female
200.4
4_1
88 years, female
197.7
18_1
88 years, male
193.8
162_1
79 years, female
190.5
348_1
84 years, male
188.5
288_1
66 years, female
174.3
172_1
72 years, female
173.7
115_1
83 years, male
168.0
352_1
62 years, male
167.8
517_1
88 years, male
163.2
314_1
67 years, male
162.6
503_1
68 years, male
162.5
316_1
62 years, male
162.4
237_1
82 years, male
160.8
490_1
67 years, female
159.9
480_1
63 years, male
159.3
396_1
62 years, male
147.2
42_1
85 years, male
145.8
243_1
75 years, male
144.2
495_1
57 years, female
141.2
320_1
89 years, female
137.2
468_1
89 years, male
136.2
335_1
73 years, female
135.6
109_1
81 years, female
133.8
406_1
79 years, male
133.4
501_1
88 years, male
132.1
322_1
76 years, male
130.9
218_1
71 years, female
130.5
526_1
61 years, male
128.3
375_1
74 years, female
126.2
163_1
78 years, male
122.7
251_1
78 years, male
121.5
354_1
81 years, female
121.4
413_1
59 years, female
120.5
415_1
77 years, female
118.7
491_1
89 years, female
113.7
319_1
81 years, male
111.2
506_1
65 years, male
110.3
265_1
87 years, male
108.5
349_1
83 years, male
107.5
405_1
91 years, male
103.9
311_1
78 years, male
100.2
99_1
64 years, male
99.6
356_1
87 years, female
98.5
291_1
76 years, male
96.9
324_1
76 years, male
96.6
414_1
84 years, female
96.5
120_1
70 years, female
96.0
264_1
73 years, female
95.1
295_1
61 years, female
94.7
499_1
55 years, female
94.7
353_1
82 years, female
94.4
315_1
62 years, female
93.5
376_1
75 years, female
93.0
313_1
79 years, female
90.2
292_1
71 years, male
89.3
389_1
86 years, female
87.6
377_1
82 years, female
85.0
394_1
75 years, female
84.9
447_1
81 years, male
82.7
89_1
63 years, male
81.9
246_1
77 years, male
81.4
293_1
68 years, female
81.4
318_1
68 years, male
80.4
404_1
82 years, female
77.8
355_1
70 years, female
75.6
119_1
70 years, female
75.1
307_1
66 years, female
75.1
173_1
67 years, male
74.8
177_1
74 years, male
73.9
351_1
91 years, male
72.5
379_1
60 years, male
72.1
425_1
59 years, female
71.6
266_1
85 years, male
64.0
321_1
62 years, female
63.1
189_1
76 years, male
61.9
384_1
83 years, male
60.7
350_1
84 years, female
60.6
452_1
88 years, female
59.1
386_1
76 years, male
47.2
347_1
72 years, male
36.5
317_1
60 years, male
30.0
254_1
77 years, female
25.4
308_1
70 years, female
23.6
41_1
94 years, female
22.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
