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SLC6A6
HPA
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  • SLC6A6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC6A6
Synonyms TAUT
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 6 member 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband p25.1
Chromosome location (bp) 14402576 - 14489349
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000131389 (version 109)
Entrez gene 6533
HGNC HGNC:11052
UniProt P31641 (UniProt - Evidence at protein level)
neXtProt NX_P31641
GeneCards SLC6A6
Antibodypedia SLC6A6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates sodium- and chloride-dependent transport of taurine 1, 2, 3, 4, 5. Mediates transport of beta-alanine 6. Can also mediate transport of hypotaurine and gamma-aminobutyric acid (GABA) (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Neurotransmitter transport, Symport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a multi-pass membrane protein that is a member of a family of sodium and chloride-ion dependent transporters. The encoded protein transports taurine and beta-alanine. There is a pseudogene for this gene on chromosome 21. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC6A6-201
ENSP00000399522
ENST00000452151
H7C1B9
[Direct mapping] Sodium- and chloride-dependent taurine transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
95 aa
10.8 kDa
No 1
SLC6A6-202
ENSP00000402059
ENST00000452775
C9JPV1
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
109 aa
12.1 kDa
No 2
SLC6A6-204
ENSP00000481625
ENST00000613060
A0A087WY96
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005369 [taurine:sodium symporter activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
Show all
721 aa
81.3 kDa
No >9
SLC6A6-208
ENSP00000482560
ENST00000621751
P31641
[Direct mapping] Sodium- and chloride-dependent taurine transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005283 [amino acid:sodium symporter activity]
GO:0005332 [gamma-aminobutyric acid:sodium:chloride symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005369 [taurine:sodium symporter activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0010940 [positive regulation of necrotic cell death]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015185 [gamma-aminobutyric acid transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0031528 [microvillus membrane]
GO:0032328 [alanine transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0043025 [neuronal cell body]
GO:0045597 [positive regulation of cell differentiation]
GO:0051939 [gamma-aminobutyric acid import]
GO:0071705 [nitrogen compound transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0098739 [import across plasma membrane]
GO:0098797 [plasma membrane protein complex]
GO:0150104 [transport across blood-brain barrier]
Show all
200 aa
22.7 kDa
No 3
SLC6A6-210
ENSP00000480890
ENST00000622186
P31641
[Direct mapping] Sodium- and chloride-dependent taurine transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005283 [amino acid:sodium symporter activity]
GO:0005332 [gamma-aminobutyric acid:sodium:chloride symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005369 [taurine:sodium symporter activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0010940 [positive regulation of necrotic cell death]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015185 [gamma-aminobutyric acid transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0030425 [dendrite]
GO:0031528 [microvillus membrane]
GO:0032328 [alanine transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0043025 [neuronal cell body]
GO:0045211 [postsynaptic membrane]
GO:0045597 [positive regulation of cell differentiation]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051939 [gamma-aminobutyric acid import]
GO:0071705 [nitrogen compound transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0098739 [import across plasma membrane]
GO:0098797 [plasma membrane protein complex]
GO:0098982 [GABA-ergic synapse]
GO:0150104 [transport across blood-brain barrier]
Show all
620 aa
69.8 kDa
No >9

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