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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:159.1 nTPM
GTEx:159.1 nTPM
FANTOM5:252.7 Scaled Tags Per Million
Pig:234.2 nTPM
Mouse:835.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 159.1
Samples: 105

Max nTPM: 256.1
Min nTPM: 89.0
Std nTPM: 36.6
Median nTPM:
490_1 67 years, female 256.1
149_1 88 years, male 242.2
81_1 67 years, male 241.3
32_1 67 years, male 238.0
466_1 57 years, female 229.9
162_1 79 years, female 229.3
491_1 89 years, female 227.0
413_1 59 years, female 218.4
415_1 77 years, female 217.8
43_1 64 years, female 217.0
126_1 63 years, male 216.8
142_1 61 years, female 208.0
9_1 66 years, female 202.0
153_1 70 years, female 199.6
137_1 83 years, male 199.0
501_1 88 years, male 198.2
89_1 63 years, male 196.4
139_1 64 years, female 195.2
414_1 84 years, female 193.3
35_1 74 years, female 193.2
495_1 57 years, female 192.9
109_1 81 years, female 190.6
2_1 77 years, female 185.8
18_1 88 years, male 185.7
17_1 71 years, male 183.6
518_1 75 years, female 182.1
324_1 76 years, male 181.5
313_1 79 years, female 181.1
117_1 61 years, male 179.6
6_1 73 years, female 178.1
246_1 77 years, male 176.6
217_1 76 years, male 175.9
480_1 63 years, male 175.1
145_1 84 years, male 174.7
115_1 83 years, male 173.2
526_1 61 years, male 172.5
288_1 66 years, female 172.1
499_1 55 years, female 171.5
311_1 78 years, male 171.0
265_1 87 years, male 169.3
229_1 69 years, female 167.7
468_1 89 years, male 167.2
315_1 62 years, female 166.4
316_1 62 years, male 166.2
254_1 77 years, female 166.0
396_1 62 years, male 164.3
266_1 85 years, male 162.3
320_1 89 years, female 162.3
377_1 82 years, female 160.2
119_1 70 years, female 160.0
42_1 85 years, male 157.7
503_1 68 years, male 155.6
4_1 88 years, female 153.2
292_1 71 years, male 153.2
406_1 79 years, male 152.3
517_1 88 years, male 150.8
322_1 76 years, male 149.4
307_1 66 years, female 148.8
386_1 76 years, male 148.6
425_1 59 years, female 148.5
120_1 70 years, female 145.7
99_1 64 years, male 145.5
405_1 91 years, male 144.4
354_1 81 years, female 143.8
376_1 75 years, female 141.6
404_1 82 years, female 141.2
335_1 73 years, female 141.1
389_1 86 years, female 140.6
251_1 78 years, male 139.8
319_1 81 years, male 139.8
348_1 84 years, male 139.7
189_1 76 years, male 138.3
314_1 67 years, male 137.1
264_1 73 years, female 136.2
347_1 72 years, male 135.8
243_1 75 years, male 134.6
506_1 65 years, male 134.2
286_1 68 years, female 134.1
379_1 60 years, male 133.3
237_1 82 years, male 132.1
318_1 68 years, male 131.5
172_1 72 years, female 130.9
375_1 74 years, female 130.2
293_1 68 years, female 128.4
291_1 76 years, male 126.6
384_1 83 years, male 123.0
308_1 70 years, female 121.0
351_1 91 years, male 120.5
352_1 62 years, male 119.8
321_1 62 years, female 119.7
350_1 84 years, female 118.4
447_1 81 years, male 117.7
356_1 87 years, female 117.3
177_1 74 years, male 114.4
349_1 83 years, male 114.0
355_1 70 years, female 114.0
295_1 61 years, female 112.8
41_1 94 years, female 110.0
394_1 75 years, female 108.8
452_1 88 years, female 106.6
173_1 67 years, male 106.1
353_1 82 years, female 104.1
218_1 71 years, female 95.9
163_1 78 years, male 93.5
317_1 60 years, male 89.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 252.7
FF:10030-101E3 24-65 years, mixed 252.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.2
Pig sample Sample description nTPM
Retina
nTPM: 234.2
Samples: 4

Max nTPM: 288.9
Min nTPM: 205.3
Sample A Female 205.3
Sample B Female 288.9
Sample C Male 219.5
Sample D Male 223.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

835.3
Mouse sample Sample description nTPM
Retina
nTPM: 835.3
Samples: 4

Max nTPM: 897.6
Min nTPM: 773.8
Sample A Male 897.6
Sample B Male 813.0
Sample C Female 856.8
Sample D Female 773.8

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