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SPATA6
HPA
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  • SPATA6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SPATA6
Synonyms FLJ10007, SRF-1, SRF1
Gene descriptioni

Full gene name according to HGNC.

Spermatogenesis associated 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p33
Chromosome location (bp) 48295373 - 48472208
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000132122 (version 109)
Entrez gene 54558
HGNC HGNC:18309
UniProt Q9NWH7 (UniProt - Evidence at protein level)
neXtProt NX_Q9NWH7
GeneCards SPATA6
Antibodypedia SPATA6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Required for formation of the sperm connecting piece during spermiogenesis. Sperm connecting piece is essential for linking the developing flagellum to the head during late spermiogenesis. May be involved in myosin-based microfilament transport through interaction with myosin subunits.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Differentiation, Spermatogenesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable myosin light chain binding activity. Predicted to be involved in motile cilium assembly and spermatogenesis. Predicted to be located in extracellular region. Predicted to be active in sperm connecting piece. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SPATA6-201
ENSP00000360907
ENST00000371841
B1AN51
[Direct mapping] Spermatogenesis-associated protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Show all
GO:0007283 [spermatogenesis]
GO:0032027 [myosin light chain binding]
GO:0097224 [sperm connecting piece]
Show all
249 aa
28.9 kDa
No 0
SPATA6-202
ENSP00000360909
ENST00000371843
Q9NWH7
[Direct mapping] Spermatogenesis-associated protein 6
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005929 [cilium]
GO:0007283 [spermatogenesis]
GO:0030154 [cell differentiation]
GO:0031514 [motile cilium]
GO:0032027 [myosin light chain binding]
GO:0042995 [cell projection]
GO:0044458 [motile cilium assembly]
GO:0097224 [sperm connecting piece]
Show all
472 aa
54 kDa
No 0
SPATA6-203
ENSP00000360913
ENST00000371847
Q9NWH7
[Direct mapping] Spermatogenesis-associated protein 6
Show all
A0A140VJV1
[Target identity:100%; Query identity:100%] Spermatogenesis associated 6, isoform CRA_a; Testicular tissue protein Li 178
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0005929 [cilium]
GO:0007283 [spermatogenesis]
GO:0030154 [cell differentiation]
GO:0031514 [motile cilium]
GO:0032027 [myosin light chain binding]
GO:0042995 [cell projection]
GO:0044458 [motile cilium assembly]
GO:0097224 [sperm connecting piece]
Show all
488 aa
56 kDa
No 0
SPATA6-204
ENSP00000379502
ENST00000396199
A8MU33
[Direct mapping] Spermatogenesis-associated protein 6
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Show all
GO:0007283 [spermatogenesis]
GO:0032027 [myosin light chain binding]
GO:0097224 [sperm connecting piece]
Show all
474 aa
54.4 kDa
No 0

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