MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.8 nTPM
HPA Brain:254.3 nTPM
GTEx:80.8 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:226.0 nTPM
Mouse:461.5 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 254.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.2
2586 Male, age 75, left hemisphere 310.1
1827 Male, age 72, unknown 191.2
2828 Female, age 72, unknown 177.9
1833 Male, age 53, unknown 173.1
2666 Male, age 74, left hemisphere 153.1
1870 Female, age 42, unknown 141.7
2219 Male, age 76, both hemispheres 127.5
2411 Female, age 72, unknown 122.8
1830 Male, age 51, unknown 120.8
2019 Male, age 18, unknown 93.4
Dorsal raphe nucleus
nTPM: 181.5
1828 Male, age 53, unknown 242.2
2016 Female, age 72, unknown 224.7
2047 Male, age 72, unknown 203.2
2298 Female, age 72, unknown 151.6
2750 Male, age 76, both hemispheres 85.9
Inferior colliculus
nTPM: 254.3
1848 Female, age 42, unknown 340.0
2849 Male, age 72, unknown 297.9
1890 Male, age 53, unknown 201.1
2097 Female, age 72, unknown 178.0
Median raphe nucleus
nTPM: 68.3
2220 Male, age 76, midline 68.3
Periaquaductal grey, anterior
nTPM: 185.0
2502 Female, age 75, unknown 206.8
1947 Male, age 18, unknown 177.7
1795 Male, age 51, unknown 170.6
Periaquaductal grey, dorsal
nTPM: 194.3
1840 Male, age 53, unknown 291.8
2464 Female, age 72, unknown 226.1
2850 Male, age 76, both hemispheres 142.2
1831 Male, age 72, unknown 117.0
Periaquaductal grey, lateral
nTPM: 157.1
2053 Male, age 18, unknown 197.8
2140 Male, age 76, both hemispheres 173.7
2272 Male, age 74, both hemispheres 99.8
Pretectal area
nTPM: 179.5
1944 Female, age 72, unknown 225.0
1816 Male, age 51, unknown 224.0
1817 Female, age 42, unknown 214.1
2224 Female, age 72, unknown 212.6
2667 Female, age 75, unknown 208.6
2825 Male, age 18, unknown 207.4
1815 Male, age 53, unknown 154.2
2316 Male, age 76, right hemisphere 151.4
2007 Male, age 72, unknown 147.8
2273 Male, age 74, both hemispheres 117.1
2407 Male, age 75, both hemispheres 112.5
Red nucleus
nTPM: 158.2
1821 Female, age 72, unknown 203.5
2769 Male, age 72, unknown 202.1
2227 Male, age 72, unknown 200.9
2588 Male, age 74, left hemisphere 200.2
2503 Female, age 72, unknown 194.8
1954 Female, age 42, unknown 187.4
1904 Male, age 53, unknown 147.8
2823 Male, age 76, right hemisphere 147.6
1865 Male, age 51, unknown 125.0
2725 Female, age 75, unknown 123.9
2785 Male, age 18, unknown 85.5
2584 Male, age 75, left hemisphere 80.1
Substantia nigra
nTPM: 200.3
1916 Female, age 42, unknown 297.0
2699 Male, age 18, unknown 290.7
2665 Male, age 74, both hemispheres 237.6
1889 Female, age 72, unknown 201.9
2241 Male, age 72, unknown 196.4
1851 Male, age 51, unknown 193.3
2409 Female, age 72, unknown 184.6
2590 Female, age 75, unknown 155.4
2583 Male, age 75, right hemisphere 145.0
1941 Male, age 53, unknown 101.4
Superior colliculus
nTPM: 167.9
2664 Male, age 75, both hemispheres 233.3
1839 Male, age 51, unknown 207.2
2261 Male, age 18, unknown 200.3
2087 Female, age 72, unknown 197.0
1796 Male, age 53, unknown 181.7
2668 Female, age 75, unknown 177.5
1895 Male, age 76, right hemisphere 162.5
2587 Male, age 74, left hemisphere 160.9
1995 Male, age 72, unknown 87.9
1913 Female, age 42, unknown 70.9
Ventral tegmental area
nTPM: 129.1
2410 Female, age 72, unknown 192.9
1915 Female, age 42, unknown 186.1
1942 Male, age 51, unknown 116.9
2218 Male, age 76, both hemispheres 113.9
2021 Male, age 53, unknown 107.9
2223 Female, age 72, unknown 57.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.8
Samples: 139

Max nTPM: 389.2
Min nTPM: 1.4
Std nTPM: 69.8
Median nTPM: 60.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 389.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 305.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 285.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 281.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 257.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 247.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 227.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 215.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 214.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 204.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 188.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 226.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 170.9
Samples: 4

Max nTPM: 205.4
Min nTPM: 129.9
Sample A Female 178.5
Sample B Female 129.9
Sample C Male 205.4
Sample D Male 169.7
Midbrain
nTPM: 176.3
Samples: 4

Max nTPM: 231.8
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 231.8
Sample C Male 216.8
Sample D Male 226.2
Periaqueductal gray
nTPM: 226.0
Samples: 3

Max nTPM: 263.4
Min nTPM: 189.9
Sample B Female 263.4
Sample C Male 224.6
Sample D Male 189.9
Superior colliculi
nTPM: 165.3
Samples: 4

Max nTPM: 211.0
Min nTPM: 75.8
Sample A Female 211.0
Sample B Female 75.8
Sample C Male 178.0
Sample D Male 196.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 461.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 461.5
Samples: 4

Max nTPM: 477.1
Min nTPM: 446.1
Sample A Male 477.1
Sample B Male 456.1
Sample C Female 446.1
Sample D Female 466.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69672725 Antisense, RP_050428_04_D04, Mouse strain C57BL/6J (56 days, male) 10.8
72472802 Antisense, RP_051101_02_F06, Mouse strain C57BL/6J (56 days, male) 8.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org