MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.1 nTPM
HPA Brain:117.7 nTPM
GTEx:155.1 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:173.2 nTPM
Mouse:34.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.6
2828 Female, age 72, unknown 128.2
2586 Male, age 75, left hemisphere 124.5
1870 Female, age 42, unknown 103.2
1827 Male, age 72, unknown 88.9
2019 Male, age 18, unknown 85.7
1833 Male, age 53, unknown 77.6
2666 Male, age 74, left hemisphere 75.5
2411 Female, age 72, unknown 72.8
1830 Male, age 51, unknown 67.2
2219 Male, age 76, both hemispheres 62.3
Dorsal raphe nucleus
nTPM: 108.6
2016 Female, age 72, unknown 128.0
1828 Male, age 53, unknown 119.0
2298 Female, age 72, unknown 117.2
2047 Male, age 72, unknown 108.4
2750 Male, age 76, both hemispheres 70.2
Inferior colliculus
nTPM: 95.0
1848 Female, age 42, unknown 115.8
2849 Male, age 72, unknown 100.4
1890 Male, age 53, unknown 85.2
2097 Female, age 72, unknown 78.6
Median raphe nucleus
nTPM: 73.6
2220 Male, age 76, midline 73.6
Periaquaductal grey, anterior
nTPM: 113.6
1795 Male, age 51, unknown 142.4
2502 Female, age 75, unknown 118.2
1947 Male, age 18, unknown 80.3
Periaquaductal grey, dorsal
nTPM: 105.8
1840 Male, age 53, unknown 129.0
2850 Male, age 76, both hemispheres 116.8
1831 Male, age 72, unknown 94.2
2464 Female, age 72, unknown 83.1
Periaquaductal grey, lateral
nTPM: 117.7
2140 Male, age 76, both hemispheres 123.5
2053 Male, age 18, unknown 121.3
2272 Male, age 74, both hemispheres 108.3
Pretectal area
nTPM: 108.8
2667 Female, age 75, unknown 127.9
2273 Male, age 74, both hemispheres 123.3
2316 Male, age 76, right hemisphere 119.0
2407 Male, age 75, both hemispheres 112.7
2224 Female, age 72, unknown 106.8
1816 Male, age 51, unknown 105.4
1944 Female, age 72, unknown 105.4
2825 Male, age 18, unknown 104.0
1817 Female, age 42, unknown 100.6
1815 Male, age 53, unknown 98.3
2007 Male, age 72, unknown 93.0
Red nucleus
nTPM: 89.5
2503 Female, age 72, unknown 109.5
2769 Male, age 72, unknown 106.3
2227 Male, age 72, unknown 101.7
1821 Female, age 72, unknown 95.1
2785 Male, age 18, unknown 92.1
2725 Female, age 75, unknown 91.8
1954 Female, age 42, unknown 89.4
1904 Male, age 53, unknown 81.9
1865 Male, age 51, unknown 81.6
2823 Male, age 76, right hemisphere 78.1
2588 Male, age 74, left hemisphere 76.8
2584 Male, age 75, left hemisphere 69.2
Substantia nigra
nTPM: 96.5
2699 Male, age 18, unknown 130.7
1916 Female, age 42, unknown 126.8
1851 Male, age 51, unknown 104.9
1889 Female, age 72, unknown 96.0
2583 Male, age 75, right hemisphere 92.9
2409 Female, age 72, unknown 91.3
2665 Male, age 74, both hemispheres 86.5
2590 Female, age 75, unknown 84.7
1941 Male, age 53, unknown 75.8
2241 Male, age 72, unknown 75.7
Superior colliculus
nTPM: 105.9
2664 Male, age 75, both hemispheres 146.3
1796 Male, age 53, unknown 130.7
1995 Male, age 72, unknown 109.1
1913 Female, age 42, unknown 107.8
2261 Male, age 18, unknown 101.8
1839 Male, age 51, unknown 100.4
2587 Male, age 74, left hemisphere 99.5
2087 Female, age 72, unknown 97.7
2668 Female, age 75, unknown 89.4
1895 Male, age 76, right hemisphere 76.6
Ventral tegmental area
nTPM: 94.9
1915 Female, age 42, unknown 108.6
2021 Male, age 53, unknown 99.5
1942 Male, age 51, unknown 98.7
2223 Female, age 72, unknown 96.2
2410 Female, age 72, unknown 88.1
2218 Male, age 76, both hemispheres 78.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 155.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.1
Samples: 139

Max nTPM: 415.6
Min nTPM: 43.9
Std nTPM: 70.2
Median nTPM: 143.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 415.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 402.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 391.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 308.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 304.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 303.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 300.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 295.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 282.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 262.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 261.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 173.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 173.2
Samples: 4

Max nTPM: 227.3
Min nTPM: 122.6
Sample A Female 227.3
Sample B Female 160.4
Sample C Male 182.4
Sample D Male 122.6
Midbrain
nTPM: 139.2
Samples: 4

Max nTPM: 182.1
Min nTPM: 83.8
Sample A Female 182.1
Sample B Female 162.5
Sample C Male 83.8
Sample D Male 128.4
Periaqueductal gray
nTPM: 171.9
Samples: 3

Max nTPM: 227.0
Min nTPM: 142.4
Sample B Female 142.4
Sample C Male 227.0
Sample D Male 146.2
Superior colliculi
nTPM: 135.0
Samples: 4

Max nTPM: 194.4
Min nTPM: 79.7
Sample A Female 194.4
Sample B Female 158.9
Sample C Male 79.7
Sample D Male 107.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 30.6
Sample A Male 41.0
Sample B Male 30.9
Sample C Female 30.6
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.3
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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