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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:264.6 nTPM
GTEx:264.6 nTPM
FANTOM5:359.0 Scaled Tags Per Million

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005825
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 264.6
Samples: 156

Max nTPM: 864.9
Min nTPM: 44.9
Std nTPM: 143.3
Median nTPM: 232.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 864.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 807.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 627.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 597.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 546.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 536.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 524.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 524.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 523.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 519.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 506.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 497.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 495.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 491.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 481.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 463.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 454.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 444.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 441.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 437.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 430.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 427.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 416.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 410.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 403.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 394.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 390.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 383.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 382.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 372.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 369.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 366.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 366.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 366.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 356.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 348.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 341.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 339.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 337.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 336.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 334.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 332.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 332.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 328.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 326.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 326.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 326.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 318.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 315.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 306.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 298.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 297.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 295.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 289.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 289.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 282.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 279.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 277.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 275.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 274.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 273.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 273.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 272.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 266.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 266.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 265.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 264.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 261.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 260.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 259.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 258.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 256.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 251.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 247.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 245.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 242.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 240.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 232.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 232.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 231.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 231.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 231.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 230.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 226.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 226.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 225.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 224.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 223.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 221.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 220.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 218.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 217.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 215.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 214.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 213.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 212.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 203.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 201.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 201.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 199.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 198.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 197.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 197.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 194.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 191.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 190.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 189.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 186.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 182.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 180.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 180.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 177.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 174.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 169.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 167.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 165.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 164.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 159.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 158.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 156.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 154.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 152.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 146.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 146.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 143.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 141.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 136.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 135.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 132.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 125.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 124.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 123.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 122.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 120.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 118.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 118.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 115.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 107.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 106.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 102.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 101.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 100.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 97.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 96.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 96.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 91.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 88.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 87.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 85.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 78.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 62.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 56.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 52.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 49.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 45.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 44.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 359.0
FF:10204-103F6 68 years, female 359.0

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