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MTSS2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:232.4 nTPM
FANTOM5:378.3 Scaled Tags Per Million
Pig:133.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048531Antibody HPA066469
Glial cells LowHigh
Neuronal cells Not detectedNot detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 232.4
Samples: 246

Max nTPM: 498.7
Min nTPM: 55.9
Std nTPM: 88.8
Median nTPM: 220.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 498.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 497.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 497.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 469.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 468.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 460.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 438.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 431.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 430.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 401.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 397.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 390.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 388.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 386.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 383.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 379.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 378.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 375.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 370.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 366.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 361.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 356.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 353.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 353.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 350.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 349.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 349.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 343.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 342.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 337.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 331.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 331.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 329.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 326.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 320.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 320.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 319.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 318.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 317.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 316.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 315.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 309.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 308.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 307.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 306.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 303.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 301.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 301.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 301.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 299.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 299.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 299.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 298.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 295.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 294.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 293.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 293.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 292.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 292.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 291.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 288.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 288.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 287.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 287.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 286.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 286.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 282.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 282.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 281.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 281.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 281.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 279.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 279.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 278.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 278.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 277.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 273.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 273.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 271.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 270.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 268.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 265.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 264.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 264.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 263.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 262.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 260.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 259.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 258.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 256.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 255.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 253.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 253.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 252.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 251.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 251.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 251.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 249.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 249.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 248.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 248.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 247.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 247.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 245.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 245.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 244.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 239.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 236.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 235.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 234.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 234.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 233.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 232.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 232.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 231.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 230.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 229.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 225.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 224.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 224.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 221.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 220.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 220.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 220.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 219.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 217.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 217.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 216.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 215.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 215.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 214.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 212.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 212.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 211.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 210.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 210.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 209.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 208.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 208.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 207.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 206.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 206.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 204.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 202.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 201.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 201.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 198.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 198.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 198.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 198.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 197.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 196.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 195.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 194.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 194.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 193.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 193.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 190.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 190.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 189.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 189.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 189.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 187.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 186.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 185.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 185.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 184.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 183.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 183.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 182.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 181.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 181.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 181.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 179.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 178.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 177.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 176.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 173.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 173.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 172.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 171.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 171.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 170.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 168.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 167.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 166.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 166.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 165.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 163.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 163.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 161.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 161.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 160.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 159.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 159.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 158.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 158.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 157.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 156.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 155.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 153.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 152.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 151.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 149.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 147.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 145.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 144.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 141.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 138.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 138.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 138.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 136.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 134.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 134.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 134.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 130.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 127.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 127.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 125.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 122.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 121.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 121.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 119.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 115.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 112.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 112.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 106.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 103.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 103.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 100.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 98.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 97.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 96.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 90.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 83.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 81.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 81.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 74.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 56.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

378.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 378.3
FF:10164-103B2 76 years, female 378.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
Pig sample Sample description nTPM
Caudate
nTPM: 133.4
Samples: 4

Max nTPM: 161.1
Min nTPM: 110.7
Sample A Female 110.7
Sample B Female 136.7
Sample C Male 161.1
Sample D Male 125.1

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