We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MTSS2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MTSS2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:269.8 nTPM
HPA Brain:547.5 nTPM
GTEx:269.8 nTPM
FANTOM5:404.1 Scaled Tags Per Million
Pig:122.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 542.0
2565 Male, age 75, midline 758.0
2816 Male, age 47, midline 539.0
2048 Male, age 55, midline 527.3
2194 Female, age 79, both hemispheres 467.2
1981 Female, age 72, midline 418.7
Cervical spinal cord, dorsal horn
nTPM: 396.4
2721 Male, age 90, both hemispheres 464.7
1877 Male, age 55, unknown 459.8
2296 Male, age 66, both hemispheres 435.5
2069 Male, age 47, both hemispheres 356.9
2173 Female, age 72, unknown 344.8
2297 Male, age 75, both hemispheres 316.8
Cervical spinal cord, ventral horn
nTPM: 547.5
2480 Male, age 75, both hemispheres 663.8
2809 Male, age 90, both hemispheres 641.3
2295 Male, age 66, both hemispheres 542.5
2820 Female, age 79, both hemispheres 516.4
2098 Female, age 72, unknown 476.0
2068 Male, age 55, unknown 444.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 269.8
Samples: 159

Max nTPM: 723.3
Min nTPM: 100.3
Std nTPM: 99.7
Median nTPM: 251.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 723.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 624.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 623.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 543.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 526.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 496.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 490.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 465.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 465.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 430.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 413.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 410.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 400.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 394.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 394.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 391.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 386.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 385.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 382.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 373.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 370.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 369.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 366.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 363.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 356.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 354.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 354.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 351.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 350.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 348.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 348.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 333.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 333.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 322.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 321.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 320.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 318.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 317.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 314.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 312.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 308.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 307.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 304.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 298.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 297.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 295.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 295.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 294.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 293.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 291.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 288.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 287.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 285.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 285.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 285.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 282.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 275.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 275.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 274.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 274.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 272.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 271.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 271.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 270.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 269.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 269.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 269.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 267.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 267.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 267.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 264.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 263.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 263.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 262.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 262.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 258.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 256.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 253.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 251.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 251.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 250.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 250.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 249.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 247.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 247.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 243.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 242.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 242.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 241.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 241.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 239.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 237.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 236.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 234.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 233.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 233.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 233.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 232.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 232.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 230.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 230.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 230.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 230.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 226.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 225.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 223.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 222.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 218.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 216.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 215.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 215.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 212.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 208.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 208.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 205.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 203.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 202.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 202.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 200.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 200.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 198.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 197.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 194.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 188.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 188.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 186.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 183.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 182.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 180.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 179.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 179.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 179.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 178.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 173.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 172.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 169.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 167.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 165.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 163.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 159.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 152.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 150.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 150.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 149.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 148.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 146.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 146.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 144.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 140.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 133.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 130.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 120.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 100.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

404.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 404.1
FF:10159-103A6 76 years, female 495.1
FF:10181-103D1 60 years, female 313.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 97.4
Samples: 4

Max nTPM: 118.7
Min nTPM: 72.2
Sample A Female 112.7
Sample B Female 86.0
Sample C Male 72.2
Sample D Male 118.7
Ventral spinal cord
nTPM: 122.6
Samples: 4

Max nTPM: 130.5
Min nTPM: 116.6
Sample A Female 130.5
Sample B Female 121.5
Sample C Male 121.9
Sample D Male 116.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org