MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:117.1 nTPM
GTEx:21.6 nTPM
FANTOM5:3.2 Scaled Tags Per Million
Pig:78.6 nTPM
Mouse:26.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
2019 Male, age 18, unknown 85.4
2411 Female, age 72, unknown 70.2
1833 Male, age 53, unknown 68.3
2219 Male, age 76, both hemispheres 62.7
1827 Male, age 72, unknown 60.0
2586 Male, age 75, left hemisphere 53.7
1830 Male, age 51, unknown 50.3
2828 Female, age 72, unknown 45.6
1870 Female, age 42, unknown 41.4
2666 Male, age 74, left hemisphere 25.3
Dorsal raphe nucleus
nTPM: 50.5
2298 Female, age 72, unknown 64.1
2047 Male, age 72, unknown 55.0
1828 Male, age 53, unknown 49.8
2750 Male, age 76, both hemispheres 45.5
2016 Female, age 72, unknown 38.0
Inferior colliculus
nTPM: 117.1
2849 Male, age 72, unknown 137.6
1848 Female, age 42, unknown 114.7
1890 Male, age 53, unknown 113.1
2097 Female, age 72, unknown 103.1
Median raphe nucleus
nTPM: 58.3
2220 Male, age 76, midline 58.3
Periaquaductal grey, anterior
nTPM: 74.2
2502 Female, age 75, unknown 172.2
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 83.3
1840 Male, age 53, unknown 143.3
2464 Female, age 72, unknown 72.8
2850 Male, age 76, both hemispheres 61.6
1831 Male, age 72, unknown 55.3
Periaquaductal grey, lateral
nTPM: 50.2
2140 Male, age 76, both hemispheres 71.1
2272 Male, age 74, both hemispheres 40.0
2053 Male, age 18, unknown 39.4
Pretectal area
nTPM: 48.3
2407 Male, age 75, both hemispheres 60.1
1944 Female, age 72, unknown 58.7
2316 Male, age 76, right hemisphere 52.9
1817 Female, age 42, unknown 52.5
2224 Female, age 72, unknown 52.2
1816 Male, age 51, unknown 48.6
2007 Male, age 72, unknown 47.7
2667 Female, age 75, unknown 45.4
2825 Male, age 18, unknown 44.4
2273 Male, age 74, both hemispheres 35.7
1815 Male, age 53, unknown 32.8
Red nucleus
nTPM: 56.5
2785 Male, age 18, unknown 77.1
2503 Female, age 72, unknown 66.8
2769 Male, age 72, unknown 62.1
2584 Male, age 75, left hemisphere 59.9
2588 Male, age 74, left hemisphere 59.5
1821 Female, age 72, unknown 58.1
2227 Male, age 72, unknown 57.6
1904 Male, age 53, unknown 56.0
2823 Male, age 76, right hemisphere 51.6
1865 Male, age 51, unknown 48.5
1954 Female, age 42, unknown 48.4
2725 Female, age 75, unknown 32.4
Substantia nigra
nTPM: 54.1
1916 Female, age 42, unknown 99.3
2241 Male, age 72, unknown 82.1
2665 Male, age 74, both hemispheres 72.8
1851 Male, age 51, unknown 60.0
2699 Male, age 18, unknown 56.2
1889 Female, age 72, unknown 52.9
2409 Female, age 72, unknown 35.9
2583 Male, age 75, right hemisphere 33.3
2590 Female, age 75, unknown 31.1
1941 Male, age 53, unknown 17.1
Superior colliculus
nTPM: 59.5
2664 Male, age 75, both hemispheres 112.6
1839 Male, age 51, unknown 90.8
1796 Male, age 53, unknown 78.2
1895 Male, age 76, right hemisphere 76.2
2587 Male, age 74, left hemisphere 65.3
2261 Male, age 18, unknown 46.1
2087 Female, age 72, unknown 40.1
2668 Female, age 75, unknown 40.1
1995 Male, age 72, unknown 25.1
1913 Female, age 42, unknown 20.2
Ventral tegmental area
nTPM: 57.2
2410 Female, age 72, unknown 72.5
2021 Male, age 53, unknown 64.7
1942 Male, age 51, unknown 64.6
1915 Female, age 42, unknown 52.1
2223 Female, age 72, unknown 49.0
2218 Male, age 76, both hemispheres 40.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 67.3
Min nTPM: 1.2
Std nTPM: 15.7
Median nTPM: 18.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 67.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 60.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 58.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 56.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 55.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 54.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 53.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 51.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 48.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.2
FF:10158-103A5 76 years, female 3.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 78.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.0
Samples: 4

Max nTPM: 73.5
Min nTPM: 9.1
Sample A Female 52.3
Sample B Female 29.0
Sample C Male 73.5
Sample D Male 9.1
Midbrain
nTPM: 78.6
Samples: 4

Max nTPM: 255.6
Min nTPM: 11.2
Sample A Female 14.4
Sample B Female 33.2
Sample C Male 11.2
Sample D Male 255.6
Periaqueductal gray
nTPM: 60.5
Samples: 3

Max nTPM: 92.0
Min nTPM: 35.1
Sample B Female 35.1
Sample C Male 92.0
Sample D Male 54.4
Superior colliculi
nTPM: 64.6
Samples: 4

Max nTPM: 139.2
Min nTPM: 8.1
Sample A Female 139.2
Sample B Female 8.1
Sample C Male 11.0
Sample D Male 100.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 22.2
Sample A Male 33.5
Sample B Male 23.1
Sample C Female 22.2
Sample D Female 25.1

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