MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.3 nTPM
HPA Brain:111.7 nTPM
GTEx:108.3 nTPM
FANTOM5:131.8 Scaled Tags Per Million
Pig:101.3 nTPM
Mouse:265.3 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.5
2411 Female, age 72, unknown 102.7
2019 Male, age 18, unknown 94.2
1870 Female, age 42, unknown 87.1
1833 Male, age 53, unknown 80.9
1827 Male, age 72, unknown 77.1
2219 Male, age 76, both hemispheres 75.9
1830 Male, age 51, unknown 71.2
2828 Female, age 72, unknown 63.1
2666 Male, age 74, left hemisphere 56.9
2586 Male, age 75, left hemisphere 46.2
Dorsal raphe nucleus
nTPM: 95.1
2298 Female, age 72, unknown 110.9
2047 Male, age 72, unknown 94.5
2750 Male, age 76, both hemispheres 94.4
1828 Male, age 53, unknown 93.6
2016 Female, age 72, unknown 82.3
Inferior colliculus
nTPM: 75.7
2097 Female, age 72, unknown 90.8
1890 Male, age 53, unknown 80.5
1848 Female, age 42, unknown 74.2
2849 Male, age 72, unknown 57.3
Median raphe nucleus
nTPM: 94.3
2220 Male, age 76, midline 94.3
Periaquaductal grey, anterior
nTPM: 84.3
2502 Female, age 75, unknown 94.9
1947 Male, age 18, unknown 81.4
1795 Male, age 51, unknown 76.5
Periaquaductal grey, dorsal
nTPM: 71.2
2464 Female, age 72, unknown 80.2
2850 Male, age 76, both hemispheres 72.3
1840 Male, age 53, unknown 70.1
1831 Male, age 72, unknown 62.3
Periaquaductal grey, lateral
nTPM: 72.1
2272 Male, age 74, both hemispheres 74.6
2053 Male, age 18, unknown 73.5
2140 Male, age 76, both hemispheres 68.1
Pretectal area
nTPM: 81.0
1944 Female, age 72, unknown 94.2
1816 Male, age 51, unknown 92.9
2224 Female, age 72, unknown 92.5
1817 Female, age 42, unknown 91.5
2007 Male, age 72, unknown 91.0
1815 Male, age 53, unknown 83.2
2273 Male, age 74, both hemispheres 81.0
2667 Female, age 75, unknown 75.4
2316 Male, age 76, right hemisphere 73.7
2825 Male, age 18, unknown 62.5
2407 Male, age 75, both hemispheres 53.3
Red nucleus
nTPM: 80.5
1821 Female, age 72, unknown 109.5
2725 Female, age 75, unknown 88.1
2503 Female, age 72, unknown 85.3
1865 Male, age 51, unknown 84.8
2823 Male, age 76, right hemisphere 84.8
2785 Male, age 18, unknown 82.1
1954 Female, age 42, unknown 82.0
1904 Male, age 53, unknown 78.8
2227 Male, age 72, unknown 76.3
2769 Male, age 72, unknown 74.1
2588 Male, age 74, left hemisphere 67.5
2584 Male, age 75, left hemisphere 52.9
Substantia nigra
nTPM: 111.7
2241 Male, age 72, unknown 166.6
1916 Female, age 42, unknown 157.7
2409 Female, age 72, unknown 131.1
1851 Male, age 51, unknown 118.5
2699 Male, age 18, unknown 102.6
2665 Male, age 74, both hemispheres 102.5
1889 Female, age 72, unknown 97.2
1941 Male, age 53, unknown 97.1
2590 Female, age 75, unknown 79.3
2583 Male, age 75, right hemisphere 63.9
Superior colliculus
nTPM: 73.5
2587 Male, age 74, left hemisphere 91.4
2668 Female, age 75, unknown 82.9
1796 Male, age 53, unknown 80.5
1895 Male, age 76, right hemisphere 77.4
1913 Female, age 42, unknown 76.4
2087 Female, age 72, unknown 74.5
2261 Male, age 18, unknown 74.1
1839 Male, age 51, unknown 67.3
1995 Male, age 72, unknown 65.0
2664 Male, age 75, both hemispheres 45.2
Ventral tegmental area
nTPM: 104.8
2410 Female, age 72, unknown 133.4
1915 Female, age 42, unknown 115.6
2218 Male, age 76, both hemispheres 107.5
2223 Female, age 72, unknown 93.5
1942 Male, age 51, unknown 92.5
2021 Male, age 53, unknown 86.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 108.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.3
Samples: 139

Max nTPM: 205.5
Min nTPM: 65.5
Std nTPM: 22.1
Median nTPM: 104.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 205.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 181.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 164.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 157.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 155.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 154.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 149.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 148.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 145.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 143.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 140.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 131.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.8
FF:10158-103A5 76 years, female 131.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 101.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.5
Samples: 4

Max nTPM: 120.2
Min nTPM: 67.8
Sample A Female 120.2
Sample B Female 83.0
Sample C Male 91.0
Sample D Male 67.8
Midbrain
nTPM: 101.3
Samples: 4

Max nTPM: 117.7
Min nTPM: 82.6
Sample A Female 117.7
Sample B Female 105.3
Sample C Male 99.4
Sample D Male 82.6
Periaqueductal gray
nTPM: 81.2
Samples: 3

Max nTPM: 87.2
Min nTPM: 69.7
Sample B Female 86.7
Sample C Male 87.2
Sample D Male 69.7
Superior colliculi
nTPM: 93.4
Samples: 4

Max nTPM: 115.1
Min nTPM: 69.4
Sample A Female 115.1
Sample B Female 69.4
Sample C Male 106.7
Sample D Male 82.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 265.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 265.3
Samples: 4

Max nTPM: 289.9
Min nTPM: 215.2
Sample A Male 289.9
Sample B Male 285.9
Sample C Female 215.2
Sample D Female 270.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
75774685 Antisense, RP_060530_01_D10, Mouse strain C57BL/6J (56 days, male) 6.3
68196923 Antisense, RP_041116_01_E11, Mouse strain C57BL/6J (56 days, male) 3.1

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