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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.0 nTPM
HPA Brain:77.3 nTPM
GTEx:82.0 nTPM
FANTOM5:251.9 Scaled Tags Per Million
Pig:5.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 53.8
2565 Male, age 75, midline 104.3
1981 Female, age 72, midline 53.1
2048 Male, age 55, midline 46.8
2194 Female, age 79, both hemispheres 33.3
2816 Male, age 47, midline 31.6
Cervical spinal cord, dorsal horn
nTPM: 56.8
2721 Male, age 90, both hemispheres 78.6
2173 Female, age 72, unknown 76.2
2069 Male, age 47, both hemispheres 62.3
1877 Male, age 55, unknown 44.2
2296 Male, age 66, both hemispheres 43.7
2297 Male, age 75, both hemispheres 35.6
Cervical spinal cord, ventral horn
nTPM: 77.3
2098 Female, age 72, unknown 171.5
2809 Male, age 90, both hemispheres 95.2
2820 Female, age 79, both hemispheres 60.6
2480 Male, age 75, both hemispheres 56.2
2068 Male, age 55, unknown 44.5
2295 Male, age 66, both hemispheres 35.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 82.0
Samples: 159

Max nTPM: 5831.0
Min nTPM: 2.5
Std nTPM: 486.8
Median nTPM: 13.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5831.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1729.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1140.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 334.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 295.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 162.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 161.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 157.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 151.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 149.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 141.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 134.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 121.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 73.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 72.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 68.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 66.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 63.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 57.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 53.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 49.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 38.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 32.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 32.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 31.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 31.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 30.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 28.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 27.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 26.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 25.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 25.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 25.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 24.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 24.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 23.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 22.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 22.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 22.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 21.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 21.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 21.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 21.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 20.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 20.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 20.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 20.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 20.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 19.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 19.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 19.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 19.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 18.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 18.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 18.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 18.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 17.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 17.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 17.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 16.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 16.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 16.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 16.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 16.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 16.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 16.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 16.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 15.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 15.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 15.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 14.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 14.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 13.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 13.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 13.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 13.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 13.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 12.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 12.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 12.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 12.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 12.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 12.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 12.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 12.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 12.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 11.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 11.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 11.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 10.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 10.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 10.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 9.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 9.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 9.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 9.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 9.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 9.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 9.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 9.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 9.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 9.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 9.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 8.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 8.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 8.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 7.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 7.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 7.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 7.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 7.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 7.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 7.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 7.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 7.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 6.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 6.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 6.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 6.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 6.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 6.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 5.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 5.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 5.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 5.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 5.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 5.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 5.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 4.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 4.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 3.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 3.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 2.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

251.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 251.9
FF:10159-103A6 76 years, female 380.4
FF:10181-103D1 60 years, female 123.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.1
Sample A Female 3.4
Sample B Female 3.1
Sample C Male 3.1
Sample D Male 4.0
Ventral spinal cord
nTPM: 5.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.9
Sample A Female 4.7
Sample B Female 3.9
Sample C Male 5.1
Sample D Male 6.4

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