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LGR6
HPA
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  • LGR6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

LGR6
Synonyms FLJ14471
Gene descriptioni

Full gene name according to HGNC.

Leucine rich repeat containing G protein-coupled receptor 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

G-protein coupled receptors
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q32.1
Chromosome location (bp) 202193799 - 202319781
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000133067 (version 109)
Entrez gene 59352
HGNC HGNC:19719
UniProt Q9HBX8 (UniProt - Evidence at protein level)
neXtProt NX_Q9HBX8
GeneCards LGR6
Antibodypedia LGR6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Receptor for R-spondins that potentiates the canonical Wnt signaling pathway and acts as a marker of multipotent stem cells in the epidermis. Upon binding to R-spondins (RSPO1, RSPO2, RSPO3 or RSPO4), associates with phosphorylated LRP6 and frizzled receptors that are activated by extracellular Wnt receptors, triggering the canonical Wnt signaling pathway to increase expression of target genes. In contrast to classical G-protein coupled receptors, does not activate heterotrimeric G-proteins to transduce the signal. May act as a tumor suppressor.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

G-protein coupled receptor, Receptor, Transducer
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Wnt signaling pathway
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the leucine-rich repeat-containing subgroup of the G protein-coupled 7-transmembrane protein superfamily. The encoded protein is a glycoprotein hormone receptor with a large N-terminal extracellular domain that contains leucine-rich repeats important for the formation of a horseshoe-shaped interaction motif for ligand binding. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
LGR6-201
ENSP00000255432
ENST00000255432
Q9HBX8
[Direct mapping] Leucine-rich repeat-containing G-protein coupled receptor 6
Show all
G-protein coupled receptors
   GPCRs excl olfactory receptors
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0004930 [G protein-coupled receptor activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007186 [G protein-coupled receptor signaling pathway]
GO:0007411 [axon guidance]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016500 [protein-hormone receptor activity]
GO:0030177 [positive regulation of Wnt signaling pathway]
GO:0030335 [positive regulation of cell migration]
GO:0031982 [vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0048495 [Roundabout binding]
GO:0050919 [negative chemotaxis]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
Show all
915 aa
99.3 kDa
No 7
LGR6-203
ENSP00000356247
ENST00000367278
Q9HBX8
[Direct mapping] Leucine-rich repeat-containing G-protein coupled receptor 6
Show all
G-protein coupled receptors
   GPCRs excl olfactory receptors
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0004930 [G protein-coupled receptor activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007186 [G protein-coupled receptor signaling pathway]
GO:0007411 [axon guidance]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016500 [protein-hormone receptor activity]
GO:0030177 [positive regulation of Wnt signaling pathway]
GO:0030335 [positive regulation of cell migration]
GO:0031982 [vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0042246 [tissue regeneration]
GO:0048495 [Roundabout binding]
GO:0050919 [negative chemotaxis]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
GO:1990523 [bone regeneration]
Show all
967 aa
104.3 kDa
Yes 7
LGR6-204
ENSP00000402284
ENST00000423542
Q5T508
[Direct mapping] Leucine-rich repeat-containing G-protein-coupled receptor 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0005515 [protein binding]
Show all
232 aa
26.2 kDa
No 0
LGR6-205
ENSP00000387869
ENST00000439764
Q9HBX8
[Direct mapping] Leucine-rich repeat-containing G-protein coupled receptor 6
Show all
G-protein coupled receptors
   GPCRs excl olfactory receptors
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0004888 [transmembrane signaling receptor activity]
GO:0004930 [G protein-coupled receptor activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007186 [G protein-coupled receptor signaling pathway]
GO:0007411 [axon guidance]
GO:0008201 [heparin binding]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016055 [Wnt signaling pathway]
GO:0016500 [protein-hormone receptor activity]
GO:0030177 [positive regulation of Wnt signaling pathway]
GO:0030335 [positive regulation of cell migration]
GO:0031982 [vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0048495 [Roundabout binding]
GO:0050919 [negative chemotaxis]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
Show all
828 aa
89.3 kDa
No 7

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