MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:111.8 nTPM
GTEx:15.7 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:75.9 nTPM
Mouse:103.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
2666 Male, age 74, left hemisphere 142.8
2586 Male, age 75, left hemisphere 111.8
1827 Male, age 72, unknown 84.6
2828 Female, age 72, unknown 73.2
2411 Female, age 72, unknown 67.9
1870 Female, age 42, unknown 61.3
1830 Male, age 51, unknown 58.5
1833 Male, age 53, unknown 57.9
2219 Male, age 76, both hemispheres 56.3
2019 Male, age 18, unknown 36.9
Dorsal raphe nucleus
nTPM: 103.5
2298 Female, age 72, unknown 114.8
1828 Male, age 53, unknown 114.5
2047 Male, age 72, unknown 111.5
2016 Female, age 72, unknown 105.0
2750 Male, age 76, both hemispheres 71.9
Inferior colliculus
nTPM: 85.0
2097 Female, age 72, unknown 104.8
1890 Male, age 53, unknown 88.5
2849 Male, age 72, unknown 77.5
1848 Female, age 42, unknown 69.2
Median raphe nucleus
nTPM: 85.7
2220 Male, age 76, midline 85.7
Periaquaductal grey, anterior
nTPM: 111.8
1947 Male, age 18, unknown 149.0
1795 Male, age 51, unknown 101.8
2502 Female, age 75, unknown 84.6
Periaquaductal grey, dorsal
nTPM: 88.3
1840 Male, age 53, unknown 108.1
2850 Male, age 76, both hemispheres 94.9
1831 Male, age 72, unknown 89.1
2464 Female, age 72, unknown 61.1
Periaquaductal grey, lateral
nTPM: 90.7
2053 Male, age 18, unknown 100.4
2272 Male, age 74, both hemispheres 93.9
2140 Male, age 76, both hemispheres 77.8
Pretectal area
nTPM: 83.4
2273 Male, age 74, both hemispheres 165.1
2407 Male, age 75, both hemispheres 157.1
2224 Female, age 72, unknown 99.5
2825 Male, age 18, unknown 94.7
1816 Male, age 51, unknown 79.5
1944 Female, age 72, unknown 66.1
2007 Male, age 72, unknown 56.0
2667 Female, age 75, unknown 55.1
2316 Male, age 76, right hemisphere 53.0
1815 Male, age 53, unknown 50.8
1817 Female, age 42, unknown 40.8
Red nucleus
nTPM: 54.4
2725 Female, age 75, unknown 112.4
2584 Male, age 75, left hemisphere 76.3
1821 Female, age 72, unknown 60.5
1954 Female, age 42, unknown 56.6
2769 Male, age 72, unknown 51.0
2227 Male, age 72, unknown 48.5
1904 Male, age 53, unknown 47.1
2588 Male, age 74, left hemisphere 44.5
1865 Male, age 51, unknown 43.9
2823 Male, age 76, right hemisphere 40.2
2785 Male, age 18, unknown 36.5
2503 Female, age 72, unknown 34.9
Substantia nigra
nTPM: 102.9
1916 Female, age 42, unknown 148.4
2583 Male, age 75, right hemisphere 141.3
2241 Male, age 72, unknown 125.5
1851 Male, age 51, unknown 121.1
2699 Male, age 18, unknown 105.5
2590 Female, age 75, unknown 103.0
1941 Male, age 53, unknown 85.0
2409 Female, age 72, unknown 77.6
1889 Female, age 72, unknown 64.3
2665 Male, age 74, both hemispheres 57.4
Superior colliculus
nTPM: 78.3
2664 Male, age 75, both hemispheres 174.8
1796 Male, age 53, unknown 95.4
2261 Male, age 18, unknown 92.9
2587 Male, age 74, left hemisphere 84.2
1839 Male, age 51, unknown 69.2
1995 Male, age 72, unknown 64.8
2668 Female, age 75, unknown 55.3
2087 Female, age 72, unknown 54.8
1913 Female, age 42, unknown 49.3
1895 Male, age 76, right hemisphere 42.6
Ventral tegmental area
nTPM: 96.9
1942 Male, age 51, unknown 114.9
2021 Male, age 53, unknown 110.8
1915 Female, age 42, unknown 108.6
2218 Male, age 76, both hemispheres 88.8
2223 Female, age 72, unknown 84.8
2410 Female, age 72, unknown 73.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 51.2
Min nTPM: 2.8
Std nTPM: 9.3
Median nTPM: 14.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 51.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 36.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 35.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 35.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 34.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 32.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.8
FF:10158-103A5 76 years, female 58.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.2
Samples: 4

Max nTPM: 66.1
Min nTPM: 30.8
Sample A Female 63.9
Sample B Female 44.0
Sample C Male 66.1
Sample D Male 30.8
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 96.4
Min nTPM: 44.4
Sample A Female 74.0
Sample B Female 44.4
Sample C Male 88.9
Sample D Male 96.4
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 68.2
Min nTPM: 41.3
Sample B Female 42.7
Sample C Male 68.2
Sample D Male 41.3
Superior colliculi
nTPM: 62.1
Samples: 4

Max nTPM: 76.1
Min nTPM: 32.1
Sample A Female 76.1
Sample B Female 32.1
Sample C Male 74.1
Sample D Male 66.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 103.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.1
Samples: 4

Max nTPM: 112.4
Min nTPM: 88.5
Sample A Male 88.5
Sample B Male 105.7
Sample C Female 112.4
Sample D Female 105.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69169654 Antisense, RP_050321_04_A03, Mouse strain C57BL/6J (56 days, male) 0.2

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