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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:995.1 nTPM
GTEx:995.1 nTPM
FANTOM5:1314.1 Scaled Tags Per Million
Pig:554.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

995.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 995.1
Samples: 105

Max nTPM: 1590.5
Min nTPM: 583.9
Std nTPM: 202.4
Median nTPM:
490_1 67 years, female 1590.5
308_1 70 years, female 1587.2
495_1 57 years, female 1479.2
491_1 89 years, female 1425.5
42_1 85 years, male 1390.5
307_1 66 years, female 1369.6
375_1 74 years, female 1330.3
41_1 94 years, female 1319.3
35_1 74 years, female 1303.6
347_1 72 years, male 1286.1
4_1 88 years, female 1262.2
237_1 82 years, male 1258.7
396_1 62 years, male 1251.2
315_1 62 years, female 1232.9
218_1 71 years, female 1232.3
173_1 67 years, male 1218.0
313_1 79 years, female 1217.3
379_1 60 years, male 1195.1
117_1 61 years, male 1185.1
137_1 83 years, male 1157.8
162_1 79 years, female 1154.9
415_1 77 years, female 1154.5
119_1 70 years, female 1144.9
145_1 84 years, male 1133.4
414_1 84 years, female 1130.0
384_1 83 years, male 1124.1
389_1 86 years, female 1122.5
466_1 57 years, female 1112.9
501_1 88 years, male 1112.2
311_1 78 years, male 1107.0
447_1 81 years, male 1104.6
452_1 88 years, female 1102.9
413_1 59 years, female 1100.2
120_1 70 years, female 1085.5
322_1 76 years, male 1072.8
314_1 67 years, male 1058.9
99_1 64 years, male 1053.1
321_1 62 years, female 1051.3
17_1 71 years, male 1025.6
126_1 63 years, male 1018.1
265_1 87 years, male 1012.6
317_1 60 years, male 1007.3
246_1 77 years, male 1001.1
139_1 64 years, female 997.1
6_1 73 years, female 986.4
354_1 81 years, female 986.3
288_1 66 years, female 981.2
89_1 63 years, male 981.1
386_1 76 years, male 979.3
266_1 85 years, male 969.8
351_1 91 years, male 965.1
109_1 81 years, female 960.6
153_1 70 years, female 960.1
394_1 75 years, female 952.3
142_1 61 years, female 946.2
376_1 75 years, female 944.1
2_1 77 years, female 938.1
518_1 75 years, female 937.3
355_1 70 years, female 933.9
243_1 75 years, male 931.4
324_1 76 years, male 927.8
295_1 61 years, female 927.5
499_1 55 years, female 924.9
43_1 64 years, female 913.3
217_1 76 years, male 908.9
526_1 61 years, male 908.5
189_1 76 years, male 907.8
377_1 82 years, female 907.5
468_1 89 years, male 903.0
320_1 89 years, female 888.2
229_1 69 years, female 886.8
348_1 84 years, male 881.4
480_1 63 years, male 874.6
349_1 83 years, male 874.3
316_1 62 years, male 871.6
32_1 67 years, male 871.5
81_1 67 years, male 868.9
254_1 77 years, female 864.9
335_1 73 years, female 863.9
149_1 88 years, male 863.6
353_1 82 years, female 842.8
264_1 73 years, female 839.8
319_1 81 years, male 833.5
291_1 76 years, male 824.8
115_1 83 years, male 824.6
404_1 82 years, female 811.8
405_1 91 years, male 801.7
18_1 88 years, male 799.9
9_1 66 years, female 790.5
293_1 68 years, female 788.4
286_1 68 years, female 782.7
172_1 72 years, female 779.3
251_1 78 years, male 770.9
506_1 65 years, male 761.2
350_1 84 years, female 758.1
503_1 68 years, male 754.1
352_1 62 years, male 744.3
177_1 74 years, male 727.2
356_1 87 years, female 727.0
318_1 68 years, male 719.9
292_1 71 years, male 718.4
425_1 59 years, female 699.3
406_1 79 years, male 685.0
517_1 88 years, male 645.5
163_1 78 years, male 583.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1314.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1314.1
FF:10030-101E3 24-65 years, mixed 1314.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

554.7
Pig sample Sample description nTPM
Retina
nTPM: 554.7
Samples: 4

Max nTPM: 675.9
Min nTPM: 505.9
Sample A Female 529.1
Sample B Female 505.9
Sample C Male 675.9
Sample D Male 508.0

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