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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:216.6 nTPM
HPA Brain:70.3 nTPM
GTEx:216.6 nTPM
FANTOM5:402.6 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.3
Sample id Sample description nTPM
Amygdala
nTPM: 51.8
1987 Female, age 91, left hemisphere 56.4
2517 Female, age 94, left hemisphere 55.8
2514 Male, age 75, right hemisphere 52.3
2814 Male, age 76, right hemisphere 51.7
2695 Female, age 67, right hemisphere 42.7
Basal amygdala
nTPM: 65.6
2243 Female, age 91, right hemisphere 99.8
2110 Male, age 80, left hemisphere 75.0
2685 Female, age 94, left hemisphere 62.3
1955 Male, age 76, both hemispheres 55.9
2609 Male, age 75, right hemisphere 55.3
2827 Female, age 67, right hemisphere 45.1
Central amygdala
nTPM: 63.0
2239 Male, age 80, left hemisphere 82.5
2701 Female, age 91, right hemisphere 70.6
2826 Female, age 94, left hemisphere 57.1
1905 Male, age 76, both hemispheres 52.6
2515 Male, age 75, right hemisphere 52.4
Corticomedial amygdala
nTPM: 70.3
2242 Female, age 91, right hemisphere 94.1
2829 Male, age 80, left hemisphere 82.1
2429 Female, age 94, left hemisphere 71.0
2240 Male, age 76, both hemispheres 66.8
2535 Female, age 67, right hemisphere 59.2
2428 Male, age 75, right hemisphere 48.9
Lateral amygdala
nTPM: 50.9
2534 Female, age 94, left hemisphere 72.3
2255 Female, age 91, right hemisphere 52.9
2516 Male, age 75, right hemisphere 52.3
1883 Male, age 76, both hemispheres 51.5
2256 Male, age 80, left hemisphere 43.4
2830 Female, age 67, right hemisphere 33.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 216.6
Samples: 152

Max nTPM: 602.0
Min nTPM: 35.1
Std nTPM: 94.5
Median nTPM: 200.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 602.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 533.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 527.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 470.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 420.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 396.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 383.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 368.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 366.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 353.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 349.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 347.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 344.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 343.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 340.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 338.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 322.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 320.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 312.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 308.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 307.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 304.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 303.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 303.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 302.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 300.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 299.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 294.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 293.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 291.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 291.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 289.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 287.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 282.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 279.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 278.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 274.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 272.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 272.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 271.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 271.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 270.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 258.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 257.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 257.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 254.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 252.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 249.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 249.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 248.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 247.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 245.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 245.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 243.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 240.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 238.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 238.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 233.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 229.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 226.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 222.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 222.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 218.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 214.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 214.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 213.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 210.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 209.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 207.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 207.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 203.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 201.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 199.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 198.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 197.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 197.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 197.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 194.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 194.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 191.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 189.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 189.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 188.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 188.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 183.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 181.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 179.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 178.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 177.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 174.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 170.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 164.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 164.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 160.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 158.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 158.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 158.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 157.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 154.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 154.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 154.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 153.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 153.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 151.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 149.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 147.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 146.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 146.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 145.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 145.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 145.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 142.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 136.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 133.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 132.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 132.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 131.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 129.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 127.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 121.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 120.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 118.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 112.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 87.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 86.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 73.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 63.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 51.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

402.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 402.6
FF:10151-102I7 76 years, female 402.6

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