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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:194.2 nTPM
HPA Brain:83.9 nTPM
GTEx:194.2 nTPM
FANTOM5:185.9 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.9
Sample id Sample description nTPM
Amygdala
nTPM: 71.4
2695 Female, age 67, right hemisphere 81.2
2814 Male, age 76, right hemisphere 73.9
2514 Male, age 75, right hemisphere 73.4
1987 Female, age 91, left hemisphere 65.7
2517 Female, age 94, left hemisphere 63.0
Basal amygdala
nTPM: 73.7
2243 Female, age 91, right hemisphere 82.0
2827 Female, age 67, right hemisphere 81.2
2685 Female, age 94, left hemisphere 72.4
1955 Male, age 76, both hemispheres 71.1
2110 Male, age 80, left hemisphere 71.1
2609 Male, age 75, right hemisphere 64.2
Central amygdala
nTPM: 77.4
2826 Female, age 94, left hemisphere 93.3
2239 Male, age 80, left hemisphere 77.7
2701 Female, age 91, right hemisphere 73.8
1905 Male, age 76, both hemispheres 72.1
2515 Male, age 75, right hemisphere 70.1
Corticomedial amygdala
nTPM: 83.9
2535 Female, age 67, right hemisphere 110.9
2242 Female, age 91, right hemisphere 91.5
2240 Male, age 76, both hemispheres 90.9
2829 Male, age 80, left hemisphere 73.8
2429 Female, age 94, left hemisphere 71.7
2428 Male, age 75, right hemisphere 64.5
Lateral amygdala
nTPM: 76.6
2830 Female, age 67, right hemisphere 86.1
1883 Male, age 76, both hemispheres 76.4
2534 Female, age 94, left hemisphere 76.4
2255 Female, age 91, right hemisphere 75.4
2516 Male, age 75, right hemisphere 74.4
2256 Male, age 80, left hemisphere 71.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 194.2
Samples: 152

Max nTPM: 326.7
Min nTPM: 79.2
Std nTPM: 38.8
Median nTPM: 187.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 326.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 323.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 317.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 303.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 290.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 280.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 262.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 245.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 243.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 243.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 243.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 243.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 240.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 239.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 238.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 238.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 238.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 234.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 233.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 232.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 230.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 228.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 226.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 225.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 224.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 223.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 221.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 221.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 220.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 220.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 220.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 220.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 219.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 219.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 218.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 217.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 217.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 216.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 215.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 215.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 214.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 211.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 210.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 210.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 210.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 210.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 207.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 207.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 207.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 206.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 206.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 205.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 201.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 200.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 200.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 199.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 197.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 196.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 196.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 195.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 194.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 192.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 191.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 190.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 189.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 189.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 189.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 188.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 188.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 187.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 187.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 187.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 186.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 184.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 183.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 183.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 183.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 182.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 181.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 181.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 180.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 179.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 179.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 179.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 179.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 178.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 177.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 177.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 176.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 176.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 176.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 174.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 174.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 173.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 173.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 172.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 172.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 170.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 170.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 170.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 169.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 168.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 168.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 167.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 166.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 166.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 164.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 163.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 160.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 160.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 158.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 156.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 156.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 156.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 155.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 154.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 154.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 153.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 149.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 148.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 148.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 145.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 144.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 144.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 143.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 137.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 136.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 135.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 132.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 129.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 122.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.9
FF:10151-102I7 76 years, female 185.9

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