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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:272.5 nTPM
HPA Brain:84.9 nTPM
GTEx:272.5 nTPM
FANTOM5:364.4 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 75.9
2194 Female, age 79, both hemispheres 82.8
2816 Male, age 47, midline 79.9
2565 Male, age 75, midline 78.3
1981 Female, age 72, midline 69.4
2048 Male, age 55, midline 68.8
Cervical spinal cord, dorsal horn
nTPM: 68.7
2296 Male, age 66, both hemispheres 76.9
2173 Female, age 72, unknown 70.8
1877 Male, age 55, unknown 69.7
2069 Male, age 47, both hemispheres 68.2
2721 Male, age 90, both hemispheres 63.9
2297 Male, age 75, both hemispheres 62.8
Cervical spinal cord, ventral horn
nTPM: 84.9
2480 Male, age 75, both hemispheres 109.2
2809 Male, age 90, both hemispheres 87.2
2295 Male, age 66, both hemispheres 85.1
2820 Female, age 79, both hemispheres 84.4
2068 Male, age 55, unknown 79.1
2098 Female, age 72, unknown 64.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

272.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 272.5
Samples: 159

Max nTPM: 526.5
Min nTPM: 138.7
Std nTPM: 71.0
Median nTPM: 267.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 526.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 515.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 481.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 455.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 455.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 416.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 392.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 387.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 381.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 375.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 370.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 369.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 368.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 368.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 364.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 363.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 362.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 358.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 348.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 347.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 341.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 336.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 335.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 332.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 331.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 331.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 330.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 330.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 328.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 327.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 326.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 323.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 320.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 320.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 317.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 316.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 315.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 313.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 313.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 313.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 311.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 311.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 310.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 310.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 310.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 309.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 309.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 305.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 305.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 303.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 302.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 299.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 298.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 297.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 297.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 296.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 295.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 293.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 292.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 291.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 291.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 290.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 289.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 287.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 286.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 285.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 282.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 282.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 282.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 280.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 278.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 277.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 276.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 276.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 275.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 274.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 271.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 270.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 267.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 267.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 267.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 267.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 266.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 265.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 265.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 264.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 263.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 263.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 260.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 260.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 259.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 259.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 255.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 250.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 249.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 248.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 248.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 247.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 247.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 244.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 243.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 242.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 242.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 241.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 241.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 239.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 237.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 237.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 237.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 235.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 234.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 232.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 230.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 229.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 228.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 227.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 226.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 226.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 225.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 224.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 223.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 219.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 219.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 216.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 214.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 213.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 212.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 211.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 209.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 209.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 209.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 206.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 203.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 203.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 200.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 199.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 197.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 197.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 192.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 191.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 188.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 185.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 182.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 180.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 180.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 178.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 174.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 170.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 170.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 169.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 165.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 159.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 155.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 151.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 150.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 143.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 142.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 138.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

364.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 364.4
FF:10181-103D1 60 years, female 369.7
FF:10159-103A6 76 years, female 359.0

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