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  • BEX1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:427.8 nTPM
HPA Brain:189.8 nTPM
GTEx:427.8 nTPM
FANTOM5:1010.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.8
Sample id Sample description nTPM
Amygdala
nTPM: 126.7
1987 Female, age 91, left hemisphere 170.0
2517 Female, age 94, left hemisphere 158.1
2814 Male, age 76, right hemisphere 121.4
2514 Male, age 75, right hemisphere 104.6
2695 Female, age 67, right hemisphere 79.6
Basal amygdala
nTPM: 187.9
2110 Male, age 80, left hemisphere 278.6
2243 Female, age 91, right hemisphere 269.1
2685 Female, age 94, left hemisphere 203.7
1955 Male, age 76, both hemispheres 135.9
2827 Female, age 67, right hemisphere 126.3
2609 Male, age 75, right hemisphere 113.8
Central amygdala
nTPM: 158.5
2239 Male, age 80, left hemisphere 230.0
2701 Female, age 91, right hemisphere 208.8
2826 Female, age 94, left hemisphere 153.6
1905 Male, age 76, both hemispheres 113.1
2515 Male, age 75, right hemisphere 86.9
Corticomedial amygdala
nTPM: 189.8
2242 Female, age 91, right hemisphere 246.1
2829 Male, age 80, left hemisphere 227.6
2429 Female, age 94, left hemisphere 201.8
2535 Female, age 67, right hemisphere 190.3
2240 Male, age 76, both hemispheres 180.2
2428 Male, age 75, right hemisphere 92.6
Lateral amygdala
nTPM: 137.6
2534 Female, age 94, left hemisphere 190.2
2255 Female, age 91, right hemisphere 188.8
2256 Male, age 80, left hemisphere 137.6
1883 Male, age 76, both hemispheres 126.2
2516 Male, age 75, right hemisphere 98.6
2830 Female, age 67, right hemisphere 84.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 427.8
Samples: 152

Max nTPM: 1583.8
Min nTPM: 35.1
Std nTPM: 221.1
Median nTPM: 394.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1583.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1196.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1042.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 946.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 906.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 854.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 839.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 829.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 822.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 812.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 794.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 762.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 746.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 727.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 727.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 713.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 712.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 703.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 680.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 635.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 623.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 623.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 622.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 618.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 611.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 605.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 585.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 569.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 569.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 565.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 555.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 553.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 538.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 535.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 534.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 532.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 525.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 525.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 521.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 520.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 515.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 513.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 513.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 507.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 502.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 501.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 497.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 497.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 496.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 495.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 494.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 486.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 476.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 472.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 465.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 455.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 451.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 451.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 442.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 441.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 439.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 435.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 430.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 429.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 428.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 424.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 424.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 420.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 413.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 412.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 409.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 402.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 396.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 395.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 395.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 394.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 393.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 392.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 391.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 386.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 385.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 380.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 379.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 378.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 368.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 367.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 366.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 364.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 360.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 349.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 343.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 340.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 339.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 335.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 335.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 332.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 320.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 317.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 313.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 310.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 309.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 308.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 305.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 304.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 296.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 291.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 288.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 286.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 285.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 277.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 275.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 274.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 273.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 272.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 271.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 271.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 266.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 262.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 258.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 258.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 250.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 248.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 248.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 246.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 244.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 244.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 240.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 234.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 233.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 233.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 228.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 225.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 223.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 218.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 217.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 204.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 202.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 199.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 198.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 166.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 162.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 160.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 154.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 152.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 143.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 138.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 133.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 129.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 105.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1010.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1010.4
FF:10151-102I7 76 years, female 1010.4

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