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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:373.2 nTPM
GTEx:373.2 nTPM
FANTOM5:136.2 Scaled Tags Per Million
Pig:164.3 nTPM
Mouse:1886.7 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA054148
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA059929
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Medium
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 373.2
Samples: 105

Max nTPM: 830.0
Min nTPM: 127.9
Std nTPM: 122.1
Median nTPM:
218_1 71 years, female 830.0
322_1 76 years, male 684.2
447_1 81 years, male 596.4
350_1 84 years, female 574.3
316_1 62 years, male 572.1
237_1 82 years, male 568.6
319_1 81 years, male 541.1
379_1 60 years, male 537.6
321_1 62 years, female 537.5
6_1 73 years, female 532.0
377_1 82 years, female 530.0
335_1 73 years, female 524.9
376_1 75 years, female 517.7
163_1 78 years, male 513.9
354_1 81 years, female 503.1
352_1 62 years, male 499.5
452_1 88 years, female 494.6
172_1 72 years, female 488.9
349_1 83 years, male 485.5
2_1 77 years, female 479.1
375_1 74 years, female 476.8
295_1 61 years, female 470.9
286_1 68 years, female 461.1
405_1 91 years, male 456.2
293_1 68 years, female 454.0
348_1 84 years, male 453.9
480_1 63 years, male 453.4
503_1 68 years, male 449.2
307_1 66 years, female 446.0
243_1 75 years, male 440.2
318_1 68 years, male 439.9
355_1 70 years, female 432.4
351_1 91 years, male 428.0
189_1 76 years, male 420.7
386_1 76 years, male 420.4
425_1 59 years, female 419.0
404_1 82 years, female 418.4
394_1 75 years, female 418.0
153_1 70 years, female 417.5
356_1 87 years, female 417.2
229_1 69 years, female 414.9
389_1 86 years, female 411.8
495_1 57 years, female 409.9
406_1 79 years, male 403.3
353_1 82 years, female 389.0
320_1 89 years, female 388.1
292_1 71 years, male 375.8
251_1 78 years, male 373.6
142_1 61 years, female 372.5
173_1 67 years, male 370.3
384_1 83 years, male 367.2
265_1 87 years, male 367.0
145_1 84 years, male 362.6
499_1 55 years, female 359.8
126_1 63 years, male 358.7
526_1 61 years, male 357.3
43_1 64 years, female 356.6
266_1 85 years, male 355.3
177_1 74 years, male 354.3
246_1 77 years, male 354.1
264_1 73 years, female 344.9
291_1 76 years, male 344.7
217_1 76 years, male 340.4
4_1 88 years, female 339.4
518_1 75 years, female 338.6
517_1 88 years, male 335.4
324_1 76 years, male 330.9
35_1 74 years, female 328.6
396_1 62 years, male 323.2
317_1 60 years, male 320.9
468_1 89 years, male 320.2
115_1 83 years, male 317.9
347_1 72 years, male 313.4
506_1 65 years, male 306.2
162_1 79 years, female 305.5
137_1 83 years, male 297.9
81_1 67 years, male 296.5
9_1 66 years, female 294.4
466_1 57 years, female 288.8
311_1 78 years, male 286.4
254_1 77 years, female 280.5
17_1 71 years, male 271.7
18_1 88 years, male 269.7
313_1 79 years, female 269.2
288_1 66 years, female 268.4
117_1 61 years, male 266.3
314_1 67 years, male 263.1
308_1 70 years, female 259.9
32_1 67 years, male 257.7
41_1 94 years, female 243.6
42_1 85 years, male 238.6
120_1 70 years, female 238.5
109_1 81 years, female 235.5
139_1 64 years, female 232.3
415_1 77 years, female 222.5
99_1 64 years, male 217.7
315_1 62 years, female 196.5
414_1 84 years, female 190.1
149_1 88 years, male 186.3
119_1 70 years, female 169.1
501_1 88 years, male 167.2
490_1 67 years, female 158.5
89_1 63 years, male 137.5
413_1 59 years, female 133.1
491_1 89 years, female 127.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 136.2
FF:10030-101E3 24-65 years, mixed 136.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.3
Pig sample Sample description nTPM
Retina
nTPM: 164.4
Samples: 4

Max nTPM: 199.8
Min nTPM: 140.2
Sample A Female 166.5
Sample B Female 140.2
Sample C Male 199.8
Sample D Male 150.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1886.7
Mouse sample Sample description nTPM
Retina
nTPM: 1886.7
Samples: 4

Max nTPM: 1938.3
Min nTPM: 1779.4
Sample A Male 1938.3
Sample B Male 1920.3
Sample C Female 1779.4
Sample D Female 1908.8

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