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MKRN1
HPA
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  • MKRN1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MKRN1
Synonyms RNF61
Gene descriptioni

Full gene name according to HGNC.

Makorin ring finger protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband q34
Chromosome location (bp) 140453033 - 140479536
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000133606 (version 109)
Entrez gene 23608
HGNC HGNC:7112
UniProt Q9UHC7 (UniProt - Evidence at protein level)
neXtProt NX_Q9UHC7
GeneCards MKRN1
Antibodypedia MKRN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. These substrates include FILIP1, p53/TP53, CDKN1A and TERT. Keeps cells alive by suppressing p53/TP53 under normal conditions, but stimulates apoptosis by repressing CDKN1A under stress conditions. Acts as a negative regulator of telomerase. Has negative and positive effects on RNA polymerase II-dependent transcription.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ubl conjugation pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that belongs to a novel class of zinc finger proteins. The encoded protein functions as a transcriptional co-regulator, and as an E3 ubiquitin ligase that promotes the ubiquitination and proteasomal degradation of target proteins. The protein encoded by this gene is thought to regulate RNA polymerase II-catalyzed transcription. Substrates for this protein's E3 ubiquitin ligase activity include the capsid protein of the West Nile virus and the catalytic subunit of the telomerase ribonucleoprotein. This protein controls cell cycle arrest and apoptosis by regulating p21, a cell cycle regulator, and the tumor suppressor protein p53. Pseudogenes of this gene are present on chromosomes 1, 3, 9, 12 and 20, and on the X chromosome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MKRN1-201
ENSP00000255977
ENST00000255977
Q9UHC7
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005575 [cellular_component]
GO:0005829 [cytosol]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
482 aa
53.3 kDa
No 0
MKRN1-202
ENSP00000416369
ENST00000443720
Q9UHC7
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005575 [cellular_component]
GO:0005829 [cytosol]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
329 aa
35.2 kDa
No 0
MKRN1-203
ENSP00000417346
ENST00000463142
H7C4H5
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
112 aa
12.6 kDa
No 0
MKRN1-204
ENSP00000418588
ENST00000467513
C9J031
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
165 aa
18 kDa
No 0
MKRN1-206
ENSP00000418864
ENST00000471104
C9IY57
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
193 aa
21.1 kDa
No 0
MKRN1-207
ENSP00000418620
ENST00000473444
C9IZP5
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
102 aa
11.3 kDa
No 0
MKRN1-208
ENSP00000417863
ENST00000474576
Q9UHC7
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005575 [cellular_component]
GO:0005829 [cytosol]
GO:0016567 [protein ubiquitination]
GO:0016740 [transferase activity]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
418 aa
47.6 kDa
No 0
MKRN1-211
ENSP00000419894
ENST00000480552
C9JYI0
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
111 aa
12.2 kDa
No 0
MKRN1-213
ENSP00000419843
ENST00000494939
C9JYX8
[Direct mapping] E3 ubiquitin-protein ligase makorin-1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000209 [protein polyubiquitination]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
136 aa
14.7 kDa
No 0

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