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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:216.9 nTPM
HPA Brain:212.5 nTPM
GTEx:216.9 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:121.2 nTPM
Mouse:88.5 nTPM
Allen mouse:5.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.5
Sample id Sample description nTPM
Amygdala
nTPM: 145.1
2814 Male, age 76, right hemisphere 172.2
2517 Female, age 94, left hemisphere 164.2
1987 Female, age 91, left hemisphere 155.0
2514 Male, age 75, right hemisphere 119.7
2695 Female, age 67, right hemisphere 114.7
Basal amygdala
nTPM: 212.5
2827 Female, age 67, right hemisphere 249.2
2685 Female, age 94, left hemisphere 241.1
2243 Female, age 91, right hemisphere 225.0
2110 Male, age 80, left hemisphere 203.6
2609 Male, age 75, right hemisphere 182.4
1955 Male, age 76, both hemispheres 173.6
Central amygdala
nTPM: 196.7
2826 Female, age 94, left hemisphere 296.3
2239 Male, age 80, left hemisphere 214.8
2701 Female, age 91, right hemisphere 159.9
1905 Male, age 76, both hemispheres 158.7
2515 Male, age 75, right hemisphere 154.0
Corticomedial amygdala
nTPM: 187.4
2535 Female, age 67, right hemisphere 243.7
2829 Male, age 80, left hemisphere 220.8
2242 Female, age 91, right hemisphere 193.8
2429 Female, age 94, left hemisphere 182.2
2428 Male, age 75, right hemisphere 142.0
2240 Male, age 76, both hemispheres 141.7
Lateral amygdala
nTPM: 205.9
2534 Female, age 94, left hemisphere 291.9
2256 Male, age 80, left hemisphere 222.5
2830 Female, age 67, right hemisphere 201.7
2255 Female, age 91, right hemisphere 191.7
1883 Male, age 76, both hemispheres 189.9
2516 Male, age 75, right hemisphere 137.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 216.9
Samples: 152

Max nTPM: 512.1
Min nTPM: 47.1
Std nTPM: 76.6
Median nTPM: 213.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 512.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 434.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 389.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 384.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 379.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 376.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 369.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 340.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 340.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 338.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 338.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 337.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 328.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 327.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 323.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 318.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 311.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 310.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 301.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 297.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 296.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 294.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 291.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 285.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 285.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 283.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 281.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 280.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 279.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 279.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 278.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 278.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 277.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 271.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 263.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 259.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 258.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 256.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 254.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 251.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 250.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 248.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 248.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 247.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 247.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 247.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 246.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 244.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 239.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 238.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 238.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 237.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 236.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 235.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 234.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 233.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 230.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 230.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 229.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 228.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 227.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 227.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 227.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 224.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 224.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 222.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 219.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 218.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 217.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 217.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 216.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 216.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 214.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 214.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 212.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 211.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 211.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 211.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 210.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 209.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 209.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 207.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 206.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 205.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 204.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 203.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 202.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 197.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 195.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 193.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 192.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 190.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 190.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 185.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 185.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 181.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 180.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 178.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 178.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 173.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 172.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 169.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 162.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 162.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 160.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 158.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 158.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 157.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 155.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 152.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 148.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 148.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 147.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 146.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 145.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 143.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 140.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 131.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 122.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 121.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 118.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 117.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 115.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 113.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 107.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 97.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 56.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.6
FF:10151-102I7 76 years, female 143.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.2
Pig sample Sample description nTPM
Amygdala
nTPM: 121.3
Samples: 4

Max nTPM: 150.4
Min nTPM: 98.9
Sample A Female 150.4
Sample B Female 98.9
Sample C Male 131.8
Sample D Male 103.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 88.6
Samples: 4

Max nTPM: 109.9
Min nTPM: 77.4
Sample A Male 86.9
Sample B Male 80.0
Sample C Female 109.9
Sample D Female 77.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.4
2089 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 5.4
2090 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 1.7

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