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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:122.6 nTPM
FANTOM5:114.1 Scaled Tags Per Million
Pig:93.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012883
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.6
Samples: 246

Max nTPM: 219.8
Min nTPM: 57.4
Std nTPM: 30.2
Median nTPM: 121.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 219.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 215.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 214.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 187.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 184.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 181.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 181.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 180.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 179.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 177.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 177.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 176.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 173.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 172.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 168.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 168.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 167.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 165.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 165.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 165.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 163.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 159.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 158.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 157.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 156.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 155.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 155.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 155.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 154.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 153.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 153.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 153.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 153.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 153.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 152.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 152.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 152.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 152.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 150.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 150.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 149.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 149.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 149.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 149.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 148.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 148.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 148.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 147.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 147.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 146.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 146.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 146.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 145.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 144.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 144.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 144.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 144.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 143.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 143.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 143.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 142.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 142.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 142.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 142.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 141.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 141.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 141.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 141.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 141.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 141.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 141.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 140.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 138.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 138.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 136.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 136.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 136.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 136.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 135.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 135.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 134.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 134.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 134.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 134.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 133.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 133.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 132.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 131.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 130.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 130.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 130.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 130.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 130.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 129.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 129.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 128.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 127.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 127.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 126.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 126.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 125.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 125.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 125.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 124.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 124.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 123.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 122.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 122.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 122.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 122.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 121.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 120.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 120.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 120.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 119.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 118.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 118.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 117.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 116.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 116.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 116.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 116.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 115.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 115.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 115.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 115.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 115.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 114.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 114.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 114.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 114.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 113.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 113.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 113.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 113.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 112.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 112.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 112.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 111.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 111.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 110.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 110.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 109.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 109.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 108.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 108.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 108.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 108.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 107.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 107.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 106.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 106.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 106.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 106.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 104.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 103.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 103.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 103.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 103.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 102.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 102.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 102.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 102.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 102.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 102.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 101.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 101.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 100.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 100.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 100.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 100.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 97.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 96.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 95.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 95.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 94.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 94.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 93.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 93.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 92.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 91.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 90.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 90.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 89.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 89.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 88.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 88.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 88.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 87.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 87.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 86.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 85.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 85.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 83.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 82.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 82.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 82.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 81.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 79.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 79.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 78.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 78.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 77.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 76.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 76.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 74.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 74.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 71.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 69.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 69.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 65.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 63.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 61.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 60.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 59.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 58.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 57.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.1
FF:10164-103B2 76 years, female 114.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.5
Pig sample Sample description nTPM
Caudate
nTPM: 93.5
Samples: 4

Max nTPM: 109.7
Min nTPM: 72.7
Sample A Female 72.7
Sample B Female 108.9
Sample C Male 109.7
Sample D Male 82.8

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