We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AGAP3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • AGAP3
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.1 nTPM
HPA Brain:113.5 nTPM
GTEx:87.1 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:50.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 98.8
2194 Female, age 79, both hemispheres 127.6
2565 Male, age 75, midline 111.8
2816 Male, age 47, midline 95.3
1981 Female, age 72, midline 89.3
2048 Male, age 55, midline 70.0
Cervical spinal cord, dorsal horn
nTPM: 103.3
2297 Male, age 75, both hemispheres 130.1
1877 Male, age 55, unknown 120.0
2721 Male, age 90, both hemispheres 106.2
2069 Male, age 47, both hemispheres 98.6
2173 Female, age 72, unknown 87.2
2296 Male, age 66, both hemispheres 77.6
Cervical spinal cord, ventral horn
nTPM: 113.5
2820 Female, age 79, both hemispheres 161.5
2068 Male, age 55, unknown 137.6
2480 Male, age 75, both hemispheres 121.7
2295 Male, age 66, both hemispheres 112.1
2809 Male, age 90, both hemispheres 96.0
2098 Female, age 72, unknown 52.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 87.1
Samples: 159

Max nTPM: 172.6
Min nTPM: 44.4
Std nTPM: 22.3
Median nTPM: 84.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 172.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 150.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 136.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 136.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 134.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 133.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 131.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 131.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 130.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 125.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 123.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 123.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 120.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 120.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 118.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 113.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 113.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 112.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 110.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 110.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 108.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 106.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 103.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 102.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 102.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 102.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 102.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 101.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 101.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 100.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 100.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 100.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 100.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 100.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 99.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 98.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 98.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 96.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 95.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 95.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 95.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 94.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 94.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 93.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 93.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 93.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 93.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 92.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 92.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 92.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 91.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 91.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 90.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 90.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 90.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 89.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 89.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 88.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 87.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 87.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 86.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 86.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 85.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 85.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 85.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 84.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 84.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 84.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 84.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 82.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 81.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 81.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 81.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 81.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 80.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 80.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 79.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 79.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 78.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 78.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 78.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 78.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 77.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 76.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 76.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 76.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 76.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 76.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 75.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 75.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 75.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 74.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 73.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 73.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 72.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 72.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 71.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 70.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 70.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 69.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 69.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 68.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 67.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 67.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 65.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 65.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 64.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 63.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 63.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 63.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 62.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 61.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 61.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 60.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 60.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 58.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 58.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 55.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 55.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 54.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 54.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 53.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 52.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 52.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 51.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 48.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 70.4
FF:10181-103D1 60 years, female 82.2
FF:10159-103A6 76 years, female 58.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.8
Samples: 4

Max nTPM: 70.5
Min nTPM: 33.2
Sample A Female 70.5
Sample B Female 37.4
Sample C Male 33.2
Sample D Male 62.0
Ventral spinal cord
nTPM: 48.7
Samples: 4

Max nTPM: 52.3
Min nTPM: 40.7
Sample A Female 52.3
Sample B Female 49.7
Sample C Male 51.9
Sample D Male 40.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org