We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SARAF
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SARAF
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:169.2 nTPM
HPA Brain:350.0 nTPM
GTEx:169.2 nTPM
FANTOM5:563.2 Scaled Tags Per Million
Pig:123.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

350.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 317.1
2565 Male, age 75, midline 398.1
1981 Female, age 72, midline 344.5
2194 Female, age 79, both hemispheres 287.9
2048 Male, age 55, midline 285.9
2816 Male, age 47, midline 269.0
Cervical spinal cord, dorsal horn
nTPM: 350.0
2296 Male, age 66, both hemispheres 393.7
2069 Male, age 47, both hemispheres 378.8
2173 Female, age 72, unknown 367.2
2297 Male, age 75, both hemispheres 346.2
2721 Male, age 90, both hemispheres 308.8
1877 Male, age 55, unknown 305.0
Cervical spinal cord, ventral horn
nTPM: 278.5
2098 Female, age 72, unknown 317.5
2295 Male, age 66, both hemispheres 287.3
2480 Male, age 75, both hemispheres 275.1
2068 Male, age 55, unknown 270.9
2809 Male, age 90, both hemispheres 267.2
2820 Female, age 79, both hemispheres 252.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 169.2
Samples: 159

Max nTPM: 257.9
Min nTPM: 89.4
Std nTPM: 32.6
Median nTPM: 166.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 257.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 254.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 247.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 245.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 238.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 238.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 231.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 228.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 227.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 223.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 220.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 217.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 217.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 216.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 212.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 212.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 212.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 211.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 210.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 208.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 206.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 206.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 203.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 202.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 199.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 198.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 198.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 195.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 194.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 194.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 193.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 193.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 193.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 193.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 192.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 192.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 191.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 191.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 190.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 190.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 189.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 187.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 186.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 185.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 185.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 184.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 184.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 182.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 182.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 181.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 181.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 181.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 181.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 181.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 179.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 179.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 178.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 177.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 177.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 177.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 176.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 176.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 175.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 172.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 172.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 172.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 171.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 170.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 170.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 170.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 169.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 168.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 168.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 167.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 167.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 166.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 166.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 166.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 166.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 165.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 165.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 164.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 162.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 161.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 160.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 160.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 159.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 159.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 159.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 159.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 159.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 159.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 157.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 157.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 157.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 155.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 155.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 155.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 154.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 154.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 153.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 152.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 152.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 151.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 151.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 151.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 150.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 150.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 149.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 148.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 147.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 147.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 146.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 145.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 145.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 144.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 144.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 141.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 140.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 140.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 140.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 139.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 139.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 136.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 135.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 135.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 133.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 130.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 130.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 129.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 127.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 126.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 126.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 123.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 122.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 120.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 116.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 116.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 115.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 115.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 114.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

563.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 563.2
FF:10181-103D1 60 years, female 630.7
FF:10159-103A6 76 years, female 495.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 108.9
Samples: 4

Max nTPM: 115.4
Min nTPM: 103.5
Sample A Female 103.5
Sample B Female 115.4
Sample C Male 109.8
Sample D Male 106.7
Ventral spinal cord
nTPM: 124.0
Samples: 4

Max nTPM: 135.3
Min nTPM: 116.8
Sample A Female 116.8
Sample B Female 135.3
Sample C Male 120.9
Sample D Male 122.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org