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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:179.9 nTPM
HPA Brain:291.8 nTPM
GTEx:179.9 nTPM
FANTOM5:445.7 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:255.2 nTPM
Allen mouse:20.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.8
Sample id Sample description nTPM
Amygdala
nTPM: 291.8
1987 Female, age 91, left hemisphere 317.6
2814 Male, age 76, right hemisphere 308.9
2514 Male, age 75, right hemisphere 301.0
2517 Female, age 94, left hemisphere 279.4
2695 Female, age 67, right hemisphere 252.0
Basal amygdala
nTPM: 255.3
2243 Female, age 91, right hemisphere 300.8
2110 Male, age 80, left hemisphere 289.6
1955 Male, age 76, both hemispheres 276.2
2685 Female, age 94, left hemisphere 263.7
2609 Male, age 75, right hemisphere 258.8
2827 Female, age 67, right hemisphere 143.0
Central amygdala
nTPM: 279.0
2239 Male, age 80, left hemisphere 323.1
2701 Female, age 91, right hemisphere 305.2
2515 Male, age 75, right hemisphere 266.8
1905 Male, age 76, both hemispheres 257.0
2826 Female, age 94, left hemisphere 243.1
Corticomedial amygdala
nTPM: 271.1
2829 Male, age 80, left hemisphere 354.7
2242 Female, age 91, right hemisphere 314.7
2240 Male, age 76, both hemispheres 283.7
2429 Female, age 94, left hemisphere 265.4
2428 Male, age 75, right hemisphere 249.9
2535 Female, age 67, right hemisphere 158.3
Lateral amygdala
nTPM: 233.4
1883 Male, age 76, both hemispheres 294.7
2255 Female, age 91, right hemisphere 252.5
2534 Female, age 94, left hemisphere 236.6
2516 Male, age 75, right hemisphere 236.4
2256 Male, age 80, left hemisphere 231.0
2830 Female, age 67, right hemisphere 149.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 179.9
Samples: 152

Max nTPM: 381.7
Min nTPM: 66.6
Std nTPM: 45.5
Median nTPM: 172.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 381.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 325.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 324.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 316.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 305.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 298.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 295.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 258.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 245.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 243.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 242.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 240.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 238.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 236.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 231.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 230.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 227.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 224.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 222.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 221.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 220.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 219.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 215.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 214.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 213.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 212.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 212.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 212.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 207.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 204.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 204.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 203.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 202.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 202.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 202.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 201.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 200.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 198.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 198.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 197.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 195.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 195.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 194.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 193.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 193.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 192.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 192.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 191.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 188.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 188.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 187.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 187.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 182.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 182.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 181.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 181.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 179.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 179.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 178.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 177.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 176.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 176.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 175.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 175.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 173.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 172.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 172.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 172.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 172.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 172.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 171.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 171.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 171.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 171.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 170.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 169.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 169.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 168.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 166.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 166.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 166.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 165.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 164.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 163.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 162.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 160.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 158.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 158.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 157.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 157.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 155.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 152.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 152.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 151.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 150.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 149.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 149.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 148.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 147.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 146.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 145.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 143.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 143.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 142.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 142.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 140.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 138.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 134.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 131.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 131.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 131.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 130.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 125.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 125.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 122.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 120.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 115.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 115.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 66.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

445.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 445.7
FF:10151-102I7 76 years, female 445.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
Pig sample Sample description nTPM
Amygdala
nTPM: 84.9
Samples: 4

Max nTPM: 107.2
Min nTPM: 76.1
Sample A Female 107.2
Sample B Female 80.0
Sample C Male 76.2
Sample D Male 76.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 255.2
Samples: 4

Max nTPM: 266.8
Min nTPM: 244.3
Sample A Male 266.8
Sample B Male 252.1
Sample C Female 244.3
Sample D Female 257.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 21.7
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 18.8

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