MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:10.7 nTPM
GTEx:65.1 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Mouse:322.7 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
2828 Female, age 72, unknown 11.0
2586 Male, age 75, left hemisphere 9.2
1827 Male, age 72, unknown 8.6
2411 Female, age 72, unknown 8.3
1830 Male, age 51, unknown 7.5
1870 Female, age 42, unknown 7.5
2019 Male, age 18, unknown 6.8
1833 Male, age 53, unknown 6.2
2666 Male, age 74, left hemisphere 5.9
2219 Male, age 76, both hemispheres 3.2
Dorsal raphe nucleus
nTPM: 8.9
2016 Female, age 72, unknown 12.1
1828 Male, age 53, unknown 8.9
2047 Male, age 72, unknown 8.3
2750 Male, age 76, both hemispheres 7.6
2298 Female, age 72, unknown 7.5
Inferior colliculus
nTPM: 7.6
1848 Female, age 42, unknown 8.9
2849 Male, age 72, unknown 8.0
2097 Female, age 72, unknown 7.2
1890 Male, age 53, unknown 6.1
Median raphe nucleus
nTPM: 7.9
2220 Male, age 76, midline 7.9
Periaquaductal grey, anterior
nTPM: 9.7
1947 Male, age 18, unknown 11.8
2502 Female, age 75, unknown 8.9
1795 Male, age 51, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 10.1
1840 Male, age 53, unknown 12.4
2850 Male, age 76, both hemispheres 11.9
1831 Male, age 72, unknown 8.7
2464 Female, age 72, unknown 7.4
Periaquaductal grey, lateral
nTPM: 10.7
2140 Male, age 76, both hemispheres 12.4
2272 Male, age 74, both hemispheres 11.8
2053 Male, age 18, unknown 8.0
Pretectal area
nTPM: 8.9
2273 Male, age 74, both hemispheres 13.1
2316 Male, age 76, right hemisphere 12.2
2667 Female, age 75, unknown 10.7
1817 Female, age 42, unknown 9.7
1815 Male, age 53, unknown 9.2
2007 Male, age 72, unknown 8.9
1944 Female, age 72, unknown 7.6
1816 Male, age 51, unknown 7.3
2825 Male, age 18, unknown 6.6
2407 Male, age 75, both hemispheres 6.5
2224 Female, age 72, unknown 5.6
Red nucleus
nTPM: 7.5
2823 Male, age 76, right hemisphere 9.7
2725 Female, age 75, unknown 8.5
2785 Male, age 18, unknown 8.5
1865 Male, age 51, unknown 8.1
2503 Female, age 72, unknown 8.1
2769 Male, age 72, unknown 7.8
2227 Male, age 72, unknown 7.6
2588 Male, age 74, left hemisphere 7.4
1904 Male, age 53, unknown 7.2
1821 Female, age 72, unknown 7.0
1954 Female, age 42, unknown 6.8
2584 Male, age 75, left hemisphere 3.4
Substantia nigra
nTPM: 8.4
2409 Female, age 72, unknown 14.8
1851 Male, age 51, unknown 10.1
2699 Male, age 18, unknown 9.7
2665 Male, age 74, both hemispheres 8.5
2590 Female, age 75, unknown 8.3
1916 Female, age 42, unknown 8.1
2241 Male, age 72, unknown 7.4
2583 Male, age 75, right hemisphere 6.1
1889 Female, age 72, unknown 6.0
1941 Male, age 53, unknown 5.5
Superior colliculus
nTPM: 8.4
1796 Male, age 53, unknown 10.7
2587 Male, age 74, left hemisphere 10.3
2261 Male, age 18, unknown 8.8
2664 Male, age 75, both hemispheres 8.7
1839 Male, age 51, unknown 8.6
2087 Female, age 72, unknown 8.3
1995 Male, age 72, unknown 7.6
1895 Male, age 76, right hemisphere 7.5
1913 Female, age 42, unknown 7.5
2668 Female, age 75, unknown 6.0
Ventral tegmental area
nTPM: 8.6
2021 Male, age 53, unknown 10.1
2218 Male, age 76, both hemispheres 10.0
1915 Female, age 42, unknown 8.8
2410 Female, age 72, unknown 7.8
1942 Male, age 51, unknown 7.7
2223 Female, age 72, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 518.3
Min nTPM: 0.0
Std nTPM: 87.2
Median nTPM: 21.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 518.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 321.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 278.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 278.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 272.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 259.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 235.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 230.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 210.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 205.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 203.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 322.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 2.4
68920779 Antisense, RP_050303_01_B12, Mouse strain C57BL/6J (56 days, male) 2.4
68632148 Antisense, RP_050125_01_G06, Mouse strain C57BL/6J (56 days, male) 1.6
68443202 Antisense, RP_050111_01_E09, Mouse strain C57BL/6J (56 days, male) 0.3
74427062 Antisense, RP_051206_02_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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