HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA Brain:51.5 nTPM
GTEx:65.5 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:5.7 nTPM
Allen mouse:4.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 51.5
Sample id Sample description nTPM
Hippocampus
nTPM: 50.2
1911 Female, age 85, right hemisphere 66.0
2621 Female, age 67, right hemisphere 54.1
2529 Female, age 94, left hemisphere 52.8
2148 Female, age 91, left hemisphere 44.7
1855 Male, age 76, left hemisphere 42.6
1898 Male, age 80, left hemisphere 41.2
Dentate gyrus
nTPM: 51.5
2530 Female, age 94, left hemisphere 59.0
2246 Female, age 85, both hemispheres 54.3
2531 Female, age 67, both hemispheres 51.8
2010 Male, age 76, both hemispheres 51.4
1927 Female, age 91, both hemispheres 50.8
2528 Male, age 74, both hemispheres 41.9
Entorhinal gyrus
nTPM: 46.9
1938 Female, age 85, left hemisphere 54.4
2117 Female, age 91, right hemisphere 48.7
2764 Male, age 80, right hemisphere 47.5
2686 Male, age 75, right hemisphere 45.1
1787 Male, age 76, left hemisphere 43.8
2613 Female, age 94, left hemisphere 42.1
Hippocampus, CA1
nTPM: 50.9
1873 Female, age 85, both hemispheres 66.8
2749 Male, age 80, left hemisphere 59.2
2045 Male, age 76, both hemispheres 48.4
2527 Male, age 74, both hemispheres 41.4
2082 Female, age 91, right hemisphere 38.4
Hippocampus, CA2
nTPM: 45.7
1963 Male, age 80, left hemisphere 52.9
1940 Female, age 85, left hemisphere 49.7
2249 Male, age 74, both hemispheres 48.7
1892 Male, age 76, both hemispheres 46.8
2437 Female, age 94, left hemisphere 38.8
2113 Female, age 91, right hemisphere 37.4
Hippocampus, CA3
nTPM: 50.1
2620 Female, age 94, left hemisphere 60.2
2137 Male, age 80, left hemisphere 59.6
1891 Female, age 85, both hemispheres 56.8
1867 Male, age 76, both hemispheres 45.5
2861 Female, age 67, both hemispheres 40.1
2436 Male, age 74, both hemispheres 38.3
Parahippocampal cortex
nTPM: 38.9
2018 Male, age 76, both hemispheres 47.4
2245 Female, age 91, both hemispheres 45.7
2532 Female, age 72, left hemisphere 45.0
1933 Female, age 85, both hemispheres 43.9
1850 Male, age 80, both hemispheres 41.8
2692 Male, age 74, both hemispheres 40.6
1990 Female, age 91, right hemisphere 35.8
2693 Female, age 94, both hemispheres 33.4
2250 Female, age 67, right hemisphere 31.4
2622 Female, age 67, right hemisphere 24.4
Perirhinal gyrus
nTPM: 40.3
1841 Female, age 85, right hemisphere 51.3
2848 Male, age 76, right hemisphere 41.1
2521 Female, age 94, right hemisphere 38.8
1847 Female, age 91, left hemisphere 35.9
1794 Male, age 80, right hemisphere 34.4
Subiculum
nTPM: 47.1
2042 Male, age 76, both hemispheres 62.7
1901 Male, age 80, both hemispheres 61.6
1977 Female, age 85, both hemispheres 48.4
2729 Female, age 91, right hemisphere 38.7
2619 Male, age 74, both hemispheres 36.3
2438 Female, age 94, left hemisphere 35.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 65.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.5
Samples: 197

Max nTPM: 161.9
Min nTPM: 21.4
Std nTPM: 21.6
Median nTPM: 64.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 161.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 121.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 120.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 119.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 117.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 106.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 104.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 104.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 104.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 103.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 102.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.9
FF:10169-103B7 60 years, female 47.7
FF:10153-102I9 76 years, female 44.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 7.5
Pig sample Sample description nTPM
Subiculum
nTPM: 4.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 2.5
Sample A Female 6.8
Sample B Female 3.4
Sample C Male 2.5
Sample D Male 4.0
Dorsal hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.1
Sample A Female 4.9
Sample B Female 3.1
Sample C Male 4.4
Sample D Male 5.4
Entorhinal cortex
nTPM: 7.6
Samples: 4

Max nTPM: 9.9
Min nTPM: 5.7
Sample A Female 6.6
Sample B Female 9.9
Sample C Male 8.0
Sample D Male 5.7
Ventral hippocampus
nTPM: 3.0
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 2.9
Sample C Male 2.9
Sample D Male 3.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 5.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.1
Sample A Male 6.7
Sample B Male 6.5
Sample C Female 5.7
Sample D Female 4.1
Hippocampal formation
nTPM: 5.2
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.9
Sample A Male 5.8
Sample B Male 5.4
Sample C Female 3.9
Sample D Female 5.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.4
68445101 Antisense, RP_050111_02_G07, Mouse strain C57BL/6J (56 days, male) 7.3
71015388 Antisense, RP_050725_02_G10, Mouse strain C57BL/6J (56 days, male) 1.5

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