MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.9 nTPM
HPA Brain:316.1 nTPM
GTEx:72.9 nTPM
FANTOM5:505.9 Scaled Tags Per Million
Pig:192.8 nTPM
Mouse:80.7 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 316.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 249.0
2019 Male, age 18, unknown 327.5
2411 Female, age 72, unknown 300.9
1830 Male, age 51, unknown 297.0
1833 Male, age 53, unknown 281.0
1870 Female, age 42, unknown 280.9
2666 Male, age 74, left hemisphere 258.2
2828 Female, age 72, unknown 220.1
2586 Male, age 75, left hemisphere 211.2
1827 Male, age 72, unknown 188.9
2219 Male, age 76, both hemispheres 123.8
Dorsal raphe nucleus
nTPM: 184.6
2750 Male, age 76, both hemispheres 262.6
2016 Female, age 72, unknown 192.6
1828 Male, age 53, unknown 188.0
2047 Male, age 72, unknown 146.3
2298 Female, age 72, unknown 133.6
Inferior colliculus
nTPM: 172.0
1890 Male, age 53, unknown 188.4
1848 Female, age 42, unknown 177.0
2097 Female, age 72, unknown 173.2
2849 Male, age 72, unknown 149.5
Median raphe nucleus
nTPM: 159.6
2220 Male, age 76, midline 159.6
Periaquaductal grey, anterior
nTPM: 158.8
2502 Female, age 75, unknown 178.9
1947 Male, age 18, unknown 162.8
1795 Male, age 51, unknown 134.6
Periaquaductal grey, dorsal
nTPM: 142.2
2464 Female, age 72, unknown 194.8
1831 Male, age 72, unknown 151.4
2850 Male, age 76, both hemispheres 121.5
1840 Male, age 53, unknown 101.1
Periaquaductal grey, lateral
nTPM: 157.2
2272 Male, age 74, both hemispheres 174.6
2053 Male, age 18, unknown 160.1
2140 Male, age 76, both hemispheres 136.9
Pretectal area
nTPM: 185.0
1815 Male, age 53, unknown 238.5
2007 Male, age 72, unknown 214.8
1817 Female, age 42, unknown 206.6
2316 Male, age 76, right hemisphere 202.3
2407 Male, age 75, both hemispheres 202.3
2273 Male, age 74, both hemispheres 177.0
2667 Female, age 75, unknown 171.9
1944 Female, age 72, unknown 161.8
2825 Male, age 18, unknown 161.8
1816 Male, age 51, unknown 155.9
2224 Female, age 72, unknown 141.5
Red nucleus
nTPM: 316.1
1904 Male, age 53, unknown 372.9
1865 Male, age 51, unknown 366.4
1821 Female, age 72, unknown 364.2
2785 Male, age 18, unknown 341.7
2227 Male, age 72, unknown 329.7
2769 Male, age 72, unknown 327.1
2823 Male, age 76, right hemisphere 312.2
2503 Female, age 72, unknown 309.1
2588 Male, age 74, left hemisphere 300.0
1954 Female, age 42, unknown 295.4
2584 Male, age 75, left hemisphere 255.8
2725 Female, age 75, unknown 218.8
Substantia nigra
nTPM: 207.1
2583 Male, age 75, right hemisphere 263.3
2409 Female, age 72, unknown 253.9
2590 Female, age 75, unknown 234.9
1889 Female, age 72, unknown 226.4
1851 Male, age 51, unknown 221.7
2241 Male, age 72, unknown 200.4
2665 Male, age 74, both hemispheres 176.9
2699 Male, age 18, unknown 169.6
1941 Male, age 53, unknown 167.6
1916 Female, age 42, unknown 156.6
Superior colliculus
nTPM: 214.6
1913 Female, age 42, unknown 305.4
1995 Male, age 72, unknown 268.3
2587 Male, age 74, left hemisphere 257.0
2668 Female, age 75, unknown 243.5
1839 Male, age 51, unknown 203.3
1895 Male, age 76, right hemisphere 194.4
1796 Male, age 53, unknown 182.5
2261 Male, age 18, unknown 180.8
2087 Female, age 72, unknown 167.1
2664 Male, age 75, both hemispheres 143.7
Ventral tegmental area
nTPM: 215.2
2223 Female, age 72, unknown 295.4
2410 Female, age 72, unknown 269.7
2021 Male, age 53, unknown 191.1
1942 Male, age 51, unknown 188.7
2218 Male, age 76, both hemispheres 173.3
1915 Female, age 42, unknown 173.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.9
Samples: 139

Max nTPM: 223.5
Min nTPM: 28.6
Std nTPM: 31.9
Median nTPM: 66.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 223.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 199.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 180.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 172.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 137.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 135.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 131.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 130.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 125.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 125.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 505.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 505.9
FF:10158-103A5 76 years, female 505.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 192.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 149.3
Samples: 4

Max nTPM: 204.8
Min nTPM: 109.2
Sample A Female 148.9
Sample B Female 109.2
Sample C Male 134.3
Sample D Male 204.8
Midbrain
nTPM: 192.8
Samples: 4

Max nTPM: 249.1
Min nTPM: 143.5
Sample A Female 227.1
Sample B Female 143.5
Sample C Male 249.1
Sample D Male 151.6
Periaqueductal gray
nTPM: 114.2
Samples: 3

Max nTPM: 131.4
Min nTPM: 99.0
Sample B Female 131.4
Sample C Male 99.0
Sample D Male 112.1
Superior colliculi
nTPM: 165.0
Samples: 4

Max nTPM: 205.0
Min nTPM: 121.2
Sample A Female 153.3
Sample B Female 121.2
Sample C Male 205.0
Sample D Male 180.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.7
Samples: 4

Max nTPM: 91.7
Min nTPM: 67.1
Sample A Male 67.1
Sample B Male 81.4
Sample C Female 91.7
Sample D Female 82.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
69288327 Antisense, RP_050331_04_E09, Mouse strain C57BL/6J (56 days, male) 9.1

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