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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:155.9 nTPM
HPA Brain:93.5 nTPM
GTEx:155.9 nTPM
FANTOM5:78.1 Scaled Tags Per Million
Pig:64.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 80.7
1981 Female, age 72, midline 112.1
2565 Male, age 75, midline 84.8
2048 Male, age 55, midline 82.5
2194 Female, age 79, both hemispheres 62.8
2816 Male, age 47, midline 61.0
Cervical spinal cord, dorsal horn
nTPM: 93.5
2173 Female, age 72, unknown 119.5
2296 Male, age 66, both hemispheres 113.1
2069 Male, age 47, both hemispheres 107.8
2721 Male, age 90, both hemispheres 75.2
1877 Male, age 55, unknown 74.6
2297 Male, age 75, both hemispheres 70.9
Cervical spinal cord, ventral horn
nTPM: 83.1
2098 Female, age 72, unknown 123.5
2480 Male, age 75, both hemispheres 95.0
2809 Male, age 90, both hemispheres 86.4
2295 Male, age 66, both hemispheres 73.9
2068 Male, age 55, unknown 72.1
2820 Female, age 79, both hemispheres 47.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 155.9
Samples: 159

Max nTPM: 273.7
Min nTPM: 96.5
Std nTPM: 31.5
Median nTPM: 151.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 273.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 257.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 247.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 237.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 229.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 228.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 220.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 215.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 214.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 213.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 212.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 208.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 207.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 203.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 199.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 194.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 193.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 190.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 190.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 187.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 187.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 187.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 186.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 186.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 184.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 184.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 183.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 181.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 181.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 177.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 176.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 175.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 175.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 173.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 173.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 173.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 173.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 173.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 172.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 171.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 170.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 170.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 170.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 169.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 169.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 169.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 169.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 168.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 167.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 165.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 165.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 165.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 163.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 163.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 163.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 162.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 162.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 162.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 161.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 161.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 159.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 159.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 158.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 158.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 157.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 155.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 154.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 154.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 153.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 153.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 153.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 153.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 153.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 152.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 151.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 151.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 151.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 150.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 150.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 150.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 146.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 145.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 145.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 144.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 143.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 142.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 142.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 141.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 141.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 141.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 141.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 140.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 139.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 139.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 139.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 138.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 137.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 136.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 136.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 136.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 136.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 135.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 135.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 135.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 135.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 134.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 134.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 134.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 134.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 133.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 131.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 130.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 130.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 130.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 130.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 128.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 128.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 127.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 125.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 124.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 123.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 122.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 122.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 122.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 122.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 120.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 119.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 118.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 115.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 113.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 111.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 99.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 98.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 97.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 78.1
FF:10181-103D1 60 years, female 87.7
FF:10159-103A6 76 years, female 68.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 55.2
Samples: 4

Max nTPM: 60.9
Min nTPM: 51.5
Sample A Female 55.7
Sample B Female 51.5
Sample C Male 60.9
Sample D Male 52.6
Ventral spinal cord
nTPM: 64.4
Samples: 4

Max nTPM: 67.2
Min nTPM: 62.2
Sample A Female 64.1
Sample B Female 67.2
Sample C Male 62.2
Sample D Male 63.9

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