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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
135.5
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
394.9
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
375.1
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
374.7
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
358.5
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
325.6
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
313.4
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
306.9
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
304.0
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
294.0
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
292.8
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
285.2
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
285.1
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
283.5
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
282.3
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
277.0
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
270.9
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
269.3
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
269.0
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
266.0
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
258.7
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
256.0
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
252.7
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
246.3
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
246.0
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
242.0
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
238.9
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
237.4
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
236.1
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
233.8
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
232.6
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
229.5
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
222.4
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
216.9
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
216.3
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
213.9
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
212.2
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
212.0
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
211.2
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
210.5
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
208.5
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
207.3
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
199.4
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
193.5
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
192.0
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
191.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
190.2
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
188.2
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
187.4
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
186.4
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
185.9
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
184.6
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
184.4
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
183.4
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
182.9
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
182.8
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
181.8
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
181.4
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
180.6
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
177.9
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
177.4
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
177.2
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
177.1
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
176.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
174.0
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
173.1
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
171.9
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
171.3
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
171.0
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
169.9
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
168.8
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
167.6
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
167.3
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
166.1
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
166.1
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
166.0
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
165.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
164.3
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
163.5
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
162.2
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
162.1
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
161.6
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
161.0
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
160.6
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
160.5
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
160.1
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
158.7
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
157.0
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
156.8
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
154.9
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
154.8
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
153.5
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
153.5
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
153.4
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
152.3
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
151.2
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
151.1
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
150.2
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
149.6
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
148.2
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
146.9
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
146.7
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
145.5
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
145.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
144.7
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
144.7
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
144.3
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
144.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
144.1
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
144.1
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
143.9
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
143.4
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
143.4
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
143.2
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
143.2
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
142.7
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
142.2
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
142.2
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
142.1
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
141.9
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
141.8
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
141.3
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
141.2
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
141.0
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
140.9
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
140.4
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
140.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
139.6
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
139.3
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
139.1
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
139.0
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
138.8
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
138.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
138.1
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
137.9
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
136.5
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
136.3
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
136.2
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
136.1
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
135.7
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
135.4
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
134.1
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
134.0
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
132.8
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
132.6
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
132.5
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
132.3
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
132.1
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
131.6
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
131.1
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
131.0
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
130.5
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
130.3
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
130.2
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
130.1
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
129.8
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
129.5
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
129.4
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
129.2
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
128.7
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
128.5
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
127.5
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
127.5
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
127.4
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
127.2
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
126.3
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
126.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
126.0
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
125.6
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
125.3
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
125.1
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
124.3
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
124.3
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
124.1
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
123.9
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
123.7
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
122.6
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
122.1
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
121.7
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
121.3
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
121.3
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
121.0
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
121.0
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
120.9
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
120.5
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
120.1
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
120.0
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
119.8
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
119.8
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
119.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
119.1
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
118.2
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
118.0
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
117.9
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
117.9
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
117.8
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
117.7
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
117.2
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
117.0
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
116.6
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
116.3
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
116.1
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
116.0
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
115.6
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
115.2
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
115.2
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
115.0
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
114.7
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
114.5
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
113.8
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
113.8
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
113.2
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
113.1
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
113.0
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
112.9
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
112.9
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
112.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
112.8
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
112.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
112.4
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
111.8
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
111.4
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
111.4
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
111.0
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
110.6
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
110.6
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
110.6
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
110.3
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
110.2
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
109.7
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
109.7
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
109.1
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
108.6
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
108.2
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
108.1
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
108.1
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
107.9
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
107.7
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
107.6
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
105.8
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
105.4
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
105.1
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
104.8
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
104.7
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
104.7
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
104.4
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
103.9
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
103.2
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
103.1
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
103.1
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
103.1
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
103.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
102.5
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
102.5
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
102.2
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
102.2
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
102.0
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
101.6
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
101.4
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
100.8
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
100.6
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
100.6
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
100.5
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
100.3
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
100.0
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
99.5
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
99.2
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
99.0
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
99.0
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
98.8
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
98.6
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
98.3
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
98.3
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
98.2
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
97.9
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
97.4
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
97.2
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
96.7
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
96.7
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
96.4
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
96.4
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
96.1
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
96.0
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
95.6
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
95.2
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
95.0
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
94.8
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
94.0
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
93.4
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
93.3
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
92.7
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
92.7
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
92.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
90.9
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
90.8
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
90.7
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
89.3
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
89.0
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
89.0
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
88.8
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
88.5
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
88.5
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
88.1
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
88.0
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
87.9
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
87.4
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
86.7
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
86.1
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
85.7
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
85.7
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
85.4
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
85.3
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
85.3
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
85.0
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
84.3
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
84.0
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
83.8
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
83.6
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
83.2
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
83.2
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
82.7
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
82.3
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
81.8
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
81.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
81.2
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
80.9
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
79.8
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
79.5
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
79.3
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
79.0
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
78.6
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
77.8
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
77.8
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
77.6
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
77.4
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
77.4
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
76.4
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
76.4
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
75.5
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
74.9
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
74.6
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
73.8
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
72.6
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
72.5
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
72.4
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
70.9
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
70.4
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
70.3
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
70.1
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
69.6
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
67.7
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
67.7
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
67.5
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
67.4
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
64.8
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
64.2
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
62.9
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
62.6
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
60.7
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
53.9
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
51.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
50.4
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
533
Tumor
0.9
471
Tumor
0.9
925
Tumor
0.9
1025
Tumor
0.9
851
Tumor
0.8
557
Tumor
0.8
573
Tumor
0.8
283
Tumor
0.8
222
Normal
0.7
478
Normal
0.7
196
Normal
0.7
957
Tumor
0.7
685
Tumor
0.7
498
Normal
0.6
525
Tumor
0.6
715
Tumor
0.6
1041
Tumor
0.6
911
Tumor
0.6
954
Normal
0.6
537
Tumor
0.6
741
Tumor
0.6
517
Tumor
0.6
223
Tumor
0.6
536
Normal
0.6
211
Tumor
0.5
311
Tumor
0.5
491
Tumor
0.5
214
Normal
0.5
745
Tumor
0.5
477
Tumor
0.5
535
Tumor
0.5
363
Tumor
0.5
617
Tumor
0.5
721
Tumor
0.5
353
Tumor
0.5
716
Normal
0.5
917
Tumor
0.5
492
Normal
0.5
218
Normal
0.5
696
Normal
0.5
743
Tumor
0.5
524
Normal
0.5
867
Tumor
0.5
916
Normal
0.5
861
Tumor
0.5
924
Normal
0.5
742
Normal
0.5
124
Normal
0.5
481
Tumor
0.5
131
Tumor
0.5
714
Normal
0.4
728
Normal
0.4
462
Normal
0.4
451
Tumor
0.4
713
Tumor
0.4
1027
Tumor
0.4
952
Normal
0.4
756
Normal
0.4
494
Normal
0.4
686
Normal
0.4
224
Normal
0.4
344
Normal
0.4
697
Tumor
0.4
484
Normal
0.4
192
Normal
0.4
918
Normal
0.4
472
Normal
0.4
553
Tumor
0.4
864
Normal
0.4
1031
Tumor
0.4
314
Normal
0.4
858
Normal
0.4
744
Normal
0.4
474
Normal
0.4
354
Normal
0.4
824
Normal
0.4
926
Normal
0.4
943
Tumor
0.4
862
Normal
0.4
746
Normal
0.3
482
Normal
0.3
866
Normal
0.3
284
Normal
0.3
913
Tumor
0.3
966
Normal
0.3
755
Tumor
0.3
938
Normal
0.3
1028
Normal
0.3
488
Normal
0.3
332
Normal
0.3
212
Normal
0.3
313
Tumor
0.3
976
Normal
0.3
328
Normal
0.3
965
Tumor
0.3
355
Tumor
0.3
923
Tumor
0.3
937
Tumor
0.3
558
Normal
0.3
147
Tumor
0.3
572
Normal
0.3
874
Normal
0.3
364
Normal
0.3
286
Normal
0.3
516
Normal
0.3
967
Tumor
0.3
136
Normal
0.3
312
Normal
0.3
958
Normal
0.3
227
Tumor
0.3
865
Tumor
0.3
968
Normal
0.3
955
Tumor
0.3
738
Normal
0.3
461
Tumor
0.3
352
Normal
0.2
852
Normal
0.2
1021
Tumor
0.2
1045
Tumor
0.2
778
Normal
0.2
963
Tumor
0.2
921
Tumor
0.2
285
Tumor
0.2
922
Normal
0.2
868
Normal
0.2
513
Tumor
0.2
114
Normal
0.2
298
Normal
0.2
228
Normal
0.2
661
Tumor
0.2
727
Tumor
0.2
737
Tumor
0.2
534
Normal
0.2
412
Normal
0.2
1032
Normal
0.2
823
Tumor
0.2
356
Normal
0.2
915
Tumor
0.2
723
Tumor
0.2
526
Normal
0.2
786
Normal
0.2
518
Normal
0.2
863
Tumor
0.2
278
Normal
0.2
514
Normal
0.2
944
Normal
0.2
978
Normal
0.2
1014
Normal
0.2
777
Tumor
0.2
665
Tumor
0.2
395
Tumor
0.2
416
Normal
0.2
1022
Normal
0.2
538
Normal
0.2
111
Normal
0.2
964
Normal
0.2
951
Tumor
0.2
1015
Tumor
0.2
358
Normal
0.2
1026
Normal
0.2
277
Tumor
0.2
217
Tumor
0.2
483
Tumor
0.1
818
Normal
0.1
975
Tumor
0.1
816
Normal
0.1
953
Tumor
0.1
195
Tumor
0.1
628
Normal
0.1
563
Tumor
0.1
698
Normal
0.1
135
Tumor
0.1
956
Normal
0.1
331
Tumor
0.1
977
Tumor
0.1
666
Normal
0.1
722
Normal
0.1
627
Tumor
0.1
546
Normal
0.1
191
Tumor
0.1
1013
Tumor
0.1
1016
Normal
0.1
882
Normal
0.1
487
Tumor
0.1
528
Normal
0.1
724
Normal
0.1
1044
Normal
0.1
616
Normal
0.1
515
Tumor
0.1
554
Normal
0.1
142
Normal
0.1
664
Normal
0.1
641
Tumor
0.1
618
Normal
0.1
615
Tumor
0.1
814
Normal
0.1
126
Normal
0.1
564
Normal
0.1
663
Tumor
0.1
984
Normal
0.1
878
Normal
0.1
647
Tumor
0.1
342
Normal
0.1
447
Tumor
0.1
912
Normal
0.1
672
Normal
0.1
914
Normal
0.1
132
Normal
0.1
1042
Normal
0.1
411
Tumor
0.1
568
Normal
0.0
448
Normal
0.0
297
Tumor
0.0
125
Tumor
0.0
785
Tumor
0.0
497
Tumor
0.0
493
Tumor
0.0
456
Normal
0.0
981
Tumor
0.0
1046
Normal
0.0
232
Normal
0.0
327
Tumor
0.0
466
Normal
0.0
648
Normal
0.0
883
Tumor
0.0
444
Normal
0.0
813
Tumor
0.0
873
Tumor
0.0
857
Tumor
0.0
415
Tumor
0.0
432
Normal
0.0
884
Normal
0.0
982
Normal
0.0
881
Tumor
0.0
258
Normal
0.0
545
Tumor
0.0
375
Tumor
0.0
146
Normal
0.0
571
Tumor
0.0
662
Normal
-0.1
817
Tumor
-0.1
262
Normal
-0.1
113
Tumor
-0.1
671
Tumor
-0.1
148
Normal
-0.1
343
Tumor
-0.1
421
Tumor
-0.1
128
Normal
-0.1
446
Normal
-0.1
464
Normal
-0.1
112
Tumor
-0.1
452
Normal
-0.1
983
Tumor
-0.1
138
Normal
-0.1
434
Normal
-0.1
272
Normal
-0.1
695
Tumor
-0.1
636
Normal
-0.1
574
Normal
-0.1
185
Tumor
-0.1
1043
Tumor
-0.1
387
Tumor
-0.1
267
Tumor
-0.1
468
Normal
-0.1
523
Tumor
-0.1
137
Tumor
-0.2
396
Normal
-0.2
467
Tumor
-0.2
188
Normal
-0.2
877
Tumor
-0.2
392
Normal
-0.2
435
Tumor
-0.2
187
Tumor
-0.2
385
Tumor
-0.2
171
Tumor
-0.2
425
Tumor
-0.2
161
Tumor
-0.2
443
Tumor
-0.2
213
Tumor
-0.2
127
Tumor
-0.2
423
Tumor
-0.2
388
Normal
-0.2
351
Tumor
-0.2
268
Normal
-0.2
436
Normal
-0.2
261
Tumor
-0.2
386
Normal
-0.2
221
Tumor
-0.2
257
Tumor
-0.3
362
Normal
-0.3
123
Tumor
-0.3
642
Normal
-0.3
145
Tumor
-0.3
426
Normal
-0.3
527
Tumor
-0.3
231
Tumor
-0.3
431
Tumor
-0.3
162
Normal
-0.3
186
Normal
-0.3
567
Tumor
-0.3
341
Tumor
-0.3
271
Tumor
-0.3
428
Normal
-0.3
141
Tumor
-0.3
393
Tumor
-0.3
413
Tumor
-0.4
465
Tumor
-0.4
384
Normal
-0.4
172
Normal
-0.4
376
Normal
-0.4
361
Tumor
-0.4
394
Normal
-0.4
635
Tumor
-0.4
366
Normal
-0.4
422
Normal
-0.4
357
Tumor
-0.4
367
Tumor
-0.5
433
Tumor
-0.5
427
Tumor
-0.5
391
Tumor
-0.5
365
Tumor
-0.5
424
Normal
-0.5
455
Tumor
-0.5
463
Tumor
-0.5
815
Tumor
-0.7
414
Normal
-0.7
368
Normal
-0.7
383
Tumor
-0.8
445
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.