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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.4 nTPM
HPA Brain:252.4 nTPM
GTEx:190.4 nTPM
FANTOM5:314.6 Scaled Tags Per Million
Pig:376.4 nTPM
Mouse:486.4 nTPM
Allen mouse:20.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.4
Sample id Sample description nTPM
Amygdala
nTPM: 217.8
1987 Female, age 91, left hemisphere 261.4
2517 Female, age 94, left hemisphere 226.8
2695 Female, age 67, right hemisphere 222.5
2514 Male, age 75, right hemisphere 211.4
2814 Male, age 76, right hemisphere 166.7
Basal amygdala
nTPM: 252.4
2685 Female, age 94, left hemisphere 308.3
2243 Female, age 91, right hemisphere 279.8
2609 Male, age 75, right hemisphere 260.7
2110 Male, age 80, left hemisphere 259.3
2827 Female, age 67, right hemisphere 203.4
1955 Male, age 76, both hemispheres 202.7
Central amygdala
nTPM: 232.2
2826 Female, age 94, left hemisphere 296.7
2515 Male, age 75, right hemisphere 245.5
2239 Male, age 80, left hemisphere 242.7
2701 Female, age 91, right hemisphere 222.4
1905 Male, age 76, both hemispheres 153.9
Corticomedial amygdala
nTPM: 251.1
2829 Male, age 80, left hemisphere 349.4
2242 Female, age 91, right hemisphere 289.8
2429 Female, age 94, left hemisphere 246.1
2428 Male, age 75, right hemisphere 239.5
2535 Female, age 67, right hemisphere 195.1
2240 Male, age 76, both hemispheres 186.9
Lateral amygdala
nTPM: 225.9
2534 Female, age 94, left hemisphere 287.5
1883 Male, age 76, both hemispheres 229.1
2516 Male, age 75, right hemisphere 227.8
2255 Female, age 91, right hemisphere 218.2
2830 Female, age 67, right hemisphere 196.8
2256 Male, age 80, left hemisphere 196.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 190.4
Samples: 152

Max nTPM: 414.1
Min nTPM: 54.3
Std nTPM: 70.6
Median nTPM: 179.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 414.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 390.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 387.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 342.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 341.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 332.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 331.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 330.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 316.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 311.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 306.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 306.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 299.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 297.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 296.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 292.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 284.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 282.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 273.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 270.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 268.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 266.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 266.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 265.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 262.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 261.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 258.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 248.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 245.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 245.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 244.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 243.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 243.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 240.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 239.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 234.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 233.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 233.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 231.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 229.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 228.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 227.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 226.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 225.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 225.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 224.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 224.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 223.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 222.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 220.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 217.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 216.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 214.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 213.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 209.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 209.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 207.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 205.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 204.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 203.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 203.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 199.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 197.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 196.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 195.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 193.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 191.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 190.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 185.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 185.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 184.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 184.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 180.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 180.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 179.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 177.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 177.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 177.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 169.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 162.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 157.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 154.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 152.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 151.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 151.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 151.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 149.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 148.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 148.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 148.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 146.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 145.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 145.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 143.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 143.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 143.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 141.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 139.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 137.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 133.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 130.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 128.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 126.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 125.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 124.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 122.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 120.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 113.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 111.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 104.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 103.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 97.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 96.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 94.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 94.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 86.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 84.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 82.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 72.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

314.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 314.6
FF:10151-102I7 76 years, female 314.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

376.4
Pig sample Sample description nTPM
Amygdala
nTPM: 376.4
Samples: 4

Max nTPM: 568.5
Min nTPM: 266.1
Sample A Female 568.5
Sample B Female 266.1
Sample C Male 312.2
Sample D Male 358.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

486.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 486.4
Samples: 4

Max nTPM: 503.8
Min nTPM: 465.8
Sample A Male 473.6
Sample B Male 503.8
Sample C Female 502.5
Sample D Female 465.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.1
655120 Antisense, RP_040922_01_A09, Mouse strain C57BL/6J (56 days, male) 26.1
110 Antisense, RP_Baylor_102634, Mouse strain C57BL/6J (56 days, male) 14.0
111 Antisense, RP_Baylor_102634, Mouse strain C57BL/6J (56 days, male) 7.8

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