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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Low
Photoreceptor cells:
Medium
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
72.4
nTPM
GTEx:
72.4
nTPM
FANTOM5:
27.8
Scaled Tags Per Million
Pig:
55.7
nTPM
Mouse:
22.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA061250
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Low
Inner plexiform layer
Low
Ganglion cells
Medium
Nerve fiber layer
Low
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA063127
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 72.4
Samples: 105
Max nTPM: 118.9
Min nTPM: 46.6
Std nTPM: 13.0
Median nTPM:
415_1
77 years, female
118.9
490_1
67 years, female
101.7
414_1
84 years, female
98.9
137_1
83 years, male
97.9
117_1
61 years, male
96.2
466_1
57 years, female
94.4
324_1
76 years, male
92.1
172_1
72 years, female
90.1
32_1
67 years, male
89.8
246_1
77 years, male
89.3
468_1
89 years, male
89.2
425_1
59 years, female
88.9
347_1
72 years, male
88.7
526_1
61 years, male
88.6
217_1
76 years, male
87.5
35_1
74 years, female
86.7
499_1
55 years, female
85.8
237_1
82 years, male
85.2
99_1
64 years, male
84.9
9_1
66 years, female
84.3
313_1
79 years, female
83.8
311_1
78 years, male
82.8
405_1
91 years, male
82.8
149_1
88 years, male
82.2
229_1
69 years, female
81.7
43_1
64 years, female
81.6
42_1
85 years, male
81.3
115_1
83 years, male
80.6
6_1
73 years, female
80.3
18_1
88 years, male
79.8
162_1
79 years, female
79.7
81_1
67 years, male
79.5
518_1
75 years, female
79.0
251_1
78 years, male
78.5
389_1
86 years, female
78.4
495_1
57 years, female
78.2
119_1
70 years, female
77.4
375_1
74 years, female
76.9
89_1
63 years, male
76.8
126_1
63 years, male
76.3
503_1
68 years, male
76.2
266_1
85 years, male
75.0
315_1
62 years, female
74.9
413_1
59 years, female
74.7
491_1
89 years, female
74.7
142_1
61 years, female
73.8
406_1
79 years, male
73.3
307_1
66 years, female
72.7
350_1
84 years, female
71.2
109_1
81 years, female
71.0
177_1
74 years, male
70.9
335_1
73 years, female
70.9
265_1
87 years, male
70.7
447_1
81 years, male
70.4
145_1
84 years, male
70.1
173_1
67 years, male
69.4
355_1
70 years, female
69.4
264_1
73 years, female
68.7
321_1
62 years, female
68.7
352_1
62 years, male
68.5
153_1
70 years, female
68.4
120_1
70 years, female
68.1
286_1
68 years, female
67.8
386_1
76 years, male
67.5
254_1
77 years, female
67.3
319_1
81 years, male
67.2
189_1
76 years, male
67.1
517_1
88 years, male
67.1
480_1
63 years, male
66.8
17_1
71 years, male
66.5
292_1
71 years, male
66.3
293_1
68 years, female
65.3
139_1
64 years, female
65.1
243_1
75 years, male
64.8
351_1
91 years, male
64.8
348_1
84 years, male
64.5
394_1
75 years, female
64.5
318_1
68 years, male
64.3
316_1
62 years, male
63.4
376_1
75 years, female
63.1
396_1
62 years, male
63.1
322_1
76 years, male
62.4
314_1
67 years, male
61.6
353_1
82 years, female
61.3
288_1
66 years, female
61.0
163_1
78 years, male
60.1
320_1
89 years, female
59.8
377_1
82 years, female
59.4
501_1
88 years, male
59.2
291_1
76 years, male
59.0
349_1
83 years, male
58.6
218_1
71 years, female
58.0
384_1
83 years, male
57.6
317_1
60 years, male
57.2
356_1
87 years, female
55.4
4_1
88 years, female
55.3
404_1
82 years, female
54.7
41_1
94 years, female
54.3
354_1
81 years, female
53.8
506_1
65 years, male
53.7
295_1
61 years, female
53.3
308_1
70 years, female
52.8
2_1
77 years, female
46.8
379_1
60 years, male
46.6
452_1
88 years, female
46.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
