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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:785.8 nTPM
FANTOM5:859.6 Scaled Tags Per Million
Pig:58.8 nTPM
Allen mouse:1.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

785.8
Sample id Sample description nTPM
Area postrema
nTPM: 785.8
2799 Male, age 61, both hemispheres 1353.7
2054 Male, age 76, both hemispheres 539.2
2306 Male, age 80, both hemispheres 464.4
Dorsal medullary reticular nucleus
nTPM: 288.0
2040 Female, age 85, both hemispheres 292.2
2373 Male, age 61, both hemispheres 289.0
2088 Male, age 76, both hemispheres 282.8
Dorsal motor vagal complex
nTPM: 390.5
2797 Male, age 61, both hemispheres 517.4
2643 Male, age 74, both hemispheres 467.3
2813 Female, age 72, unknown 398.6
2185 Male, age 76, both hemispheres 389.5
2000 Male, age 74, unknown 369.7
2807 Female, age 85, both hemispheres 350.2
2844 Male, age 55, unknown 330.7
2133 Female, age 91, both hemispheres 300.3
Gigantocellular reticular nuclei, medullary
nTPM: 261.9
2314 Male, age 61, both hemispheres 380.1
2462 Male, age 74, both hemispheres 265.0
1876 Female, age 85, both hemispheres 259.3
2387 Female, age 91, both hemispheres 238.5
2022 Male, age 76, right hemisphere 235.9
2310 Male, age 80, both hemispheres 192.3
Gigantocellular reticular nuclei, pars
nTPM: 251.0
2084 Female, age 85, both hemispheres 270.9
2336 Male, age 61, both hemispheres 256.5
2706 Male, age 80, both hemispheres 256.3
2330 Male, age 80, both hemispheres 253.1
2168 Male, age 76, both hemispheres 218.4
Inferior olive
nTPM: 514.8
2085 Female, age 85, both hemispheres 554.1
2563 Male, age 74, both hemispheres 553.4
2178 Male, age 61, both hemispheres 505.8
2379 Male, age 80, both hemispheres 489.6
2628 Female, age 91, both hemispheres 471.3
Lateral medullary reticular nucleus
nTPM: 426.4
2804 Female, age 91, both hemispheres 510.4
2374 Male, age 61, both hemispheres 460.8
2305 Male, age 74, both hemispheres 412.1
2190 Female, age 85, both hemispheres 408.8
2044 Male, age 76, both hemispheres 397.4
2852 Male, age 80, both hemispheres 368.7
Medial olivary nucleus
nTPM: 597.6
2138 Female, age 91, both hemispheres 728.5
1943 Male, age 61, both hemispheres 637.6
1962 Male, age 76, both hemispheres 573.3
2851 Male, age 80, both hemispheres 450.9
Medial vestibular nucleus
nTPM: 343.3
2134 Male, age 76, both hemispheres 471.4
2743 Female, age 85, both hemispheres 401.0
2624 Male, age 61, both hemispheres 392.0
2801 Male, age 74, both hemispheres 349.2
2093 Male, age 80, both hemispheres 235.6
2803 Female, age 91, both hemispheres 210.5
Motor hypoglossal nucleus
nTPM: 322.4
2277 Male, age 76, both hemispheres 455.4
2461 Male, age 61, both hemispheres 380.0
2125 Female, age 91, both hemispheres 265.6
2182 Male, age 80, both hemispheres 265.3
2132 Female, age 85, both hemispheres 245.6
Nucleus ambiguus
nTPM: 395.3
2071 Male, age 76, both hemispheres 616.6
2096 Female, age 85, both hemispheres 174.0
Nucleus cuneatus
nTPM: 331.0
2808 Female, age 85, both hemispheres 424.2
2564 Male, age 74, both hemispheres 404.9
2380 Male, age 80, both hemispheres 388.4
2376 Male, age 61, both hemispheres 357.2
2562 Male, age 61, both hemispheres 351.8
2100 Male, age 76, both hemispheres 296.5
2805 Female, age 91, both hemispheres 267.0
2131 Male, age 76, both hemispheres 255.7
2381 Male, age 80, both hemispheres 233.7
Nucleus gracilis
nTPM: 369.8
2627 Male, age 74, both hemispheres 473.3
2299 Female, age 85, both hemispheres 344.8
2382 Male, age 80, both hemispheres 291.3
Nucleus raphe obscurus
nTPM: 474.3
2142 Male, age 76, midline 673.2
2845 Female, age 85, midline 392.8
2800 Male, age 61, midline 356.8
Nucleus raphe pallidus
nTPM: 577.7
1924 Male, age 61, midline 806.4
2145 Male, age 76, midline 554.4
2183 Male, age 80, midline 372.3
Nucleus tractus solitarii
nTPM: 413.3
2144 Female, age 91, right hemisphere 594.8
2191 Female, age 85, both hemispheres 408.9
2656 Male, age 76, both hemispheres 332.2
2307 Male, age 80, both hemispheres 317.5
Parvicellular reticular nuclei
nTPM: 280.4
2095 Male, age 76, both hemispheres 355.7
2119 Male, age 80, both hemispheres 326.9
2558 Male, age 74, both hemispheres 158.7
Parvicellular reticular nuclei, medullary
nTPM: 280.2
2091 Female, age 85, both hemispheres 289.1
2181 Male, age 80, left hemisphere 276.5
2189 Female, age 91, both hemispheres 275.0
Peritrigeminal nucleus
nTPM: 472.8
2136 Male, age 76, both hemispheres 506.6
2067 Female, age 85, both hemispheres 496.3
2179 Male, age 61, both hemispheres 415.5
Prepositus hypoglossal nucleus
nTPM: 391.3
2086 Male, age 80, both hemispheres 423.6
2855 Female, age 85, right hemisphere 359.0
Spinal trigeminal nucleus, caudal
nTPM: 298.3
2312 Male, age 61, both hemispheres 338.8
2642 Male, age 74, both hemispheres 321.7
2308 Male, age 80, both hemispheres 310.9
2447 Male, age 76, both hemispheres 275.8
2390 Female, age 91, both hemispheres 244.5
Spinal trigeminal nucleus, interpolar
nTPM: 292.2
2066 Male, age 76, right hemisphere 388.3
2033 Male, age 80, both hemispheres 325.8
2625 Male, age 61, both hemispheres 256.5
2386 Female, age 85, both hemispheres 249.0
2389 Female, age 91, both hemispheres 241.2
Spinal vestibular nucleus
nTPM: 293.7
2748 Male, age 76, both hemispheres 374.6
2780 Male, age 80, both hemispheres 306.9
2384 Male, age 74, both hemispheres 294.0
2806 Female, age 85, both hemispheres 289.4
2796 Male, age 61, both hemispheres 267.8
2186 Female, age 91, both hemispheres 229.6
Superior vestibular nucleus
nTPM: 508.3
2061 Male, age 76, both hemispheres 626.8
2383 Male, age 74, both hemispheres 503.7
2015 Male, age 80, both hemispheres 394.3
Ventral medullary reticular nucleus
nTPM: 319.4
2372 Male, age 61, both hemispheres 367.5
2060 Male, age 76, both hemispheres 271.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 389.7
2180 Male, age 61, both hemispheres 438.1
1986 Male, age 76, both hemispheres 422.8
2302 Female, age 91, both hemispheres 418.8
2741 Female, age 85, both hemispheres 357.9
2118 Male, age 80, both hemispheres 310.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

859.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 859.6
FF:10155-103A2 76 years, female 976.5
FF:10038-101F2 18-64 years, mixed 811.2
FF:10174-103C3 60 years, female 791.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 58.8
Samples: 4

Max nTPM: 72.8
Min nTPM: 48.1
Sample A Female 60.4
Sample B Female 72.8
Sample C Male 54.0
Sample D Male 48.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.2
77413704 Antisense, RP_070205_01_E07, Mouse strain C57BL/6J (56 days, male) 2.5
70919167 Antisense, RP_050712_04_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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