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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:176.6 nTPM
HPA Brain:497.6 nTPM
GTEx:176.6 nTPM
FANTOM5:1635.0 Scaled Tags Per Million
Pig:57.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

497.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 497.6
2048 Male, age 55, midline 684.5
1981 Female, age 72, midline 511.8
2816 Male, age 47, midline 458.8
2565 Male, age 75, midline 441.4
2194 Female, age 79, both hemispheres 391.5
Cervical spinal cord, dorsal horn
nTPM: 424.9
2296 Male, age 66, both hemispheres 534.0
2173 Female, age 72, unknown 483.8
2069 Male, age 47, both hemispheres 464.4
2721 Male, age 90, both hemispheres 423.5
1877 Male, age 55, unknown 396.7
2297 Male, age 75, both hemispheres 247.0
Cervical spinal cord, ventral horn
nTPM: 445.3
2098 Female, age 72, unknown 729.7
2809 Male, age 90, both hemispheres 499.3
2295 Male, age 66, both hemispheres 432.4
2480 Male, age 75, both hemispheres 366.7
2068 Male, age 55, unknown 334.2
2820 Female, age 79, both hemispheres 309.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 176.6
Samples: 159

Max nTPM: 548.0
Min nTPM: 56.7
Std nTPM: 87.1
Median nTPM: 154.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 548.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 545.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 517.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 488.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 409.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 405.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 384.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 346.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 333.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 318.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 315.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 313.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 304.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 298.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 284.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 282.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 279.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 269.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 265.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 258.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 257.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 243.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 239.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 231.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 227.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 227.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 226.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 226.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 226.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 226.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 224.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 223.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 219.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 218.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 215.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 215.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 212.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 208.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 207.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 206.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 202.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 202.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 200.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 199.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 197.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 197.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 195.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 192.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 190.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 189.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 186.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 185.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 184.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 183.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 181.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 180.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 179.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 179.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 176.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 176.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 175.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 174.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 172.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 172.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 166.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 165.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 165.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 162.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 161.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 160.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 160.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 158.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 157.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 157.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 157.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 154.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 152.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 151.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 151.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 150.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 150.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 149.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 148.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 148.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 146.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 144.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 143.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 143.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 143.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 142.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 141.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 139.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 138.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 137.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 137.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 129.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 129.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 128.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 127.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 124.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 124.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 124.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 124.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 123.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 122.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 121.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 121.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 121.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 121.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 121.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 121.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 121.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 118.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 117.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 117.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 116.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 116.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 114.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 113.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 113.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 112.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 111.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 111.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 110.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 108.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 102.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 100.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 98.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 97.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 95.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 92.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 92.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 87.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 83.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 81.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 75.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 67.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 67.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 57.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 56.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1635.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1635.0
FF:10159-103A6 76 years, female 2019.2
FF:10181-103D1 60 years, female 1250.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 39.3
Sample A Female 59.4
Sample B Female 57.3
Sample C Male 39.3
Sample D Male 59.9
Ventral spinal cord
nTPM: 57.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 54.4
Sample A Female 61.8
Sample B Female 60.0
Sample C Male 54.4
Sample D Male 54.8

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