MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA Brain:138.5 nTPM
GTEx:36.9 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:126.3 nTPM
Mouse:117.4 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.1
2411 Female, age 72, unknown 138.0
2666 Male, age 74, left hemisphere 128.2
1833 Male, age 53, unknown 121.4
1827 Male, age 72, unknown 118.8
2019 Male, age 18, unknown 118.8
1870 Female, age 42, unknown 118.1
2586 Male, age 75, left hemisphere 114.4
1830 Male, age 51, unknown 113.0
2219 Male, age 76, both hemispheres 105.6
2828 Female, age 72, unknown 104.3
Dorsal raphe nucleus
nTPM: 123.2
2298 Female, age 72, unknown 138.8
2047 Male, age 72, unknown 128.0
2750 Male, age 76, both hemispheres 126.4
1828 Male, age 53, unknown 116.5
2016 Female, age 72, unknown 106.1
Inferior colliculus
nTPM: 115.1
2097 Female, age 72, unknown 127.3
1848 Female, age 42, unknown 117.9
2849 Male, age 72, unknown 108.4
1890 Male, age 53, unknown 106.6
Median raphe nucleus
nTPM: 132.2
2220 Male, age 76, midline 132.2
Periaquaductal grey, anterior
nTPM: 130.5
2502 Female, age 75, unknown 143.7
1947 Male, age 18, unknown 136.4
1795 Male, age 51, unknown 111.5
Periaquaductal grey, dorsal
nTPM: 108.3
1840 Male, age 53, unknown 119.4
2464 Female, age 72, unknown 110.0
2850 Male, age 76, both hemispheres 106.2
1831 Male, age 72, unknown 97.7
Periaquaductal grey, lateral
nTPM: 104.4
2053 Male, age 18, unknown 110.6
2140 Male, age 76, both hemispheres 107.7
2272 Male, age 74, both hemispheres 95.0
Pretectal area
nTPM: 119.2
2007 Male, age 72, unknown 141.7
1816 Male, age 51, unknown 133.5
1817 Female, age 42, unknown 131.8
1815 Male, age 53, unknown 128.5
2224 Female, age 72, unknown 127.1
1944 Female, age 72, unknown 126.7
2667 Female, age 75, unknown 110.9
2825 Male, age 18, unknown 110.0
2316 Male, age 76, right hemisphere 102.3
2407 Male, age 75, both hemispheres 100.2
2273 Male, age 74, both hemispheres 98.5
Red nucleus
nTPM: 115.7
1821 Female, age 72, unknown 134.6
2503 Female, age 72, unknown 123.3
1865 Male, age 51, unknown 118.4
1904 Male, age 53, unknown 116.2
2785 Male, age 18, unknown 116.2
1954 Female, age 42, unknown 116.1
2588 Male, age 74, left hemisphere 114.4
2725 Female, age 75, unknown 114.0
2769 Male, age 72, unknown 113.1
2227 Male, age 72, unknown 111.3
2584 Male, age 75, left hemisphere 110.6
2823 Male, age 76, right hemisphere 100.4
Substantia nigra
nTPM: 138.5
1916 Female, age 42, unknown 174.4
2241 Male, age 72, unknown 159.9
1851 Male, age 51, unknown 150.7
1941 Male, age 53, unknown 147.2
1889 Female, age 72, unknown 144.5
2409 Female, age 72, unknown 138.2
2699 Male, age 18, unknown 124.5
2665 Male, age 74, both hemispheres 122.7
2583 Male, age 75, right hemisphere 112.8
2590 Female, age 75, unknown 109.7
Superior colliculus
nTPM: 115.5
2668 Female, age 75, unknown 139.8
2587 Male, age 74, left hemisphere 137.0
2261 Male, age 18, unknown 119.8
2087 Female, age 72, unknown 119.5
1839 Male, age 51, unknown 116.8
1796 Male, age 53, unknown 115.4
1895 Male, age 76, right hemisphere 109.9
1913 Female, age 42, unknown 103.8
2664 Male, age 75, both hemispheres 96.9
1995 Male, age 72, unknown 96.5
Ventral tegmental area
nTPM: 129.2
2410 Female, age 72, unknown 155.8
1915 Female, age 42, unknown 135.0
2218 Male, age 76, both hemispheres 130.5
2223 Female, age 72, unknown 125.8
1942 Male, age 51, unknown 120.1
2021 Male, age 53, unknown 108.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.9
Samples: 139

Max nTPM: 75.8
Min nTPM: 22.1
Std nTPM: 10.3
Median nTPM: 34.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 69.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 69.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 57.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 57.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 54.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 54.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 53.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 126.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.1
Samples: 4

Max nTPM: 144.8
Min nTPM: 81.8
Sample A Female 144.8
Sample B Female 91.6
Sample C Male 122.2
Sample D Male 81.8
Midbrain
nTPM: 126.3
Samples: 4

Max nTPM: 146.2
Min nTPM: 109.0
Sample A Female 128.2
Sample B Female 109.0
Sample C Male 146.2
Sample D Male 121.6
Periaqueductal gray
nTPM: 94.0
Samples: 3

Max nTPM: 102.3
Min nTPM: 86.0
Sample B Female 93.7
Sample C Male 102.3
Sample D Male 86.0
Superior colliculi
nTPM: 117.8
Samples: 4

Max nTPM: 139.0
Min nTPM: 89.3
Sample A Female 130.1
Sample B Female 89.3
Sample C Male 139.0
Sample D Male 112.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 117.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 125.8
Min nTPM: 110.8
Sample A Male 110.8
Sample B Male 117.2
Sample C Female 125.8
Sample D Female 115.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
67814217 Antisense, RP_040920_01_G05, Mouse strain C57BL/6J (56 days, male) 14.4

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