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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1489.4 nTPM
GTEx:1489.4 nTPM
FANTOM5:357.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011271Antibody HPA011272Antibody CAB013023Antibody CAB035987Antibody CAB058693Antibody CAB080415
Squamous epithelial cells LowMediumHighHighHighLow







VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1489.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1489.4
Samples: 156

Max nTPM: 9280.2
Min nTPM: 96.7
Std nTPM: 1656.4
Median nTPM: 738.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 9280.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 6238.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 5936.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 5452.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 5424.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 5421.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 5076.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 4840.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 4771.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 4734.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 4637.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 4358.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 4290.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 4282.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 4247.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 3847.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3797.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 3725.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 3626.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 3462.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3389.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 3322.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3245.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2997.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2991.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2967.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2948.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2902.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 2858.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2804.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2768.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2736.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2730.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2701.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2684.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2646.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2488.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2486.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2471.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2436.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2400.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2222.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2166.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2137.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2131.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2088.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2084.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2063.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2015.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1931.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1855.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1772.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1767.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1749.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1705.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1671.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1664.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1660.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1629.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1629.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1615.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1569.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1534.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1454.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1377.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1327.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1219.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1200.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1090.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 976.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 956.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 931.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 913.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 912.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 817.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 816.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 794.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 747.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 729.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 721.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 717.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 697.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 683.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 664.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 573.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 555.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 435.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 420.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 412.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 383.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 379.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 353.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 345.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 332.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 299.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 293.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 290.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 281.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 280.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 245.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 239.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 238.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 234.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 234.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 230.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 226.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 223.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 219.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 218.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 217.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 216.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 214.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 202.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 199.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 199.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 197.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 192.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 191.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 185.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 183.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 183.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 180.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 179.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 178.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 175.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 174.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 174.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 173.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 170.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 166.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 160.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 159.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 158.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 158.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 156.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 154.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 152.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 147.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 146.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 146.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 145.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 145.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 144.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 143.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 140.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 136.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 133.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 129.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 128.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 127.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 120.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 116.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 113.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 112.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 110.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 96.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

357.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 357.2
FF:10204-103F6 68 years, female 357.2

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