MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.1 nTPM
HPA Brain:89.5 nTPM
GTEx:103.1 nTPM
FANTOM5:310.1 Scaled Tags Per Million
Pig:192.9 nTPM
Mouse:141.2 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.7
1870 Female, age 42, unknown 93.9
2828 Female, age 72, unknown 87.7
2411 Female, age 72, unknown 85.2
1833 Male, age 53, unknown 82.4
1830 Male, age 51, unknown 79.0
2019 Male, age 18, unknown 73.7
1827 Male, age 72, unknown 70.2
2219 Male, age 76, both hemispheres 61.9
2586 Male, age 75, left hemisphere 57.8
2666 Male, age 74, left hemisphere 54.7
Dorsal raphe nucleus
nTPM: 89.5
2016 Female, age 72, unknown 101.2
2298 Female, age 72, unknown 97.6
2750 Male, age 76, both hemispheres 96.2
1828 Male, age 53, unknown 83.8
2047 Male, age 72, unknown 68.8
Inferior colliculus
nTPM: 69.7
2097 Female, age 72, unknown 74.5
1848 Female, age 42, unknown 72.5
1890 Male, age 53, unknown 66.3
2849 Male, age 72, unknown 65.8
Median raphe nucleus
nTPM: 66.1
2220 Male, age 76, midline 66.1
Periaquaductal grey, anterior
nTPM: 70.9
1947 Male, age 18, unknown 74.9
1795 Male, age 51, unknown 71.1
2502 Female, age 75, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 84.6
2850 Male, age 76, both hemispheres 108.0
2464 Female, age 72, unknown 79.2
1840 Male, age 53, unknown 77.7
1831 Male, age 72, unknown 73.5
Periaquaductal grey, lateral
nTPM: 86.0
2140 Male, age 76, both hemispheres 89.9
2053 Male, age 18, unknown 87.4
2272 Male, age 74, both hemispheres 80.7
Pretectal area
nTPM: 77.9
2273 Male, age 74, both hemispheres 105.5
2316 Male, age 76, right hemisphere 98.5
2224 Female, age 72, unknown 94.0
2667 Female, age 75, unknown 91.2
1815 Male, age 53, unknown 77.9
2825 Male, age 18, unknown 77.0
1817 Female, age 42, unknown 72.4
2407 Male, age 75, both hemispheres 64.7
1944 Female, age 72, unknown 62.4
2007 Male, age 72, unknown 57.6
1816 Male, age 51, unknown 55.8
Red nucleus
nTPM: 88.3
1904 Male, age 53, unknown 107.2
1821 Female, age 72, unknown 103.6
1865 Male, age 51, unknown 102.8
1954 Female, age 42, unknown 102.8
2823 Male, age 76, right hemisphere 100.8
2769 Male, age 72, unknown 97.8
2227 Male, age 72, unknown 96.6
2503 Female, age 72, unknown 90.4
2725 Female, age 75, unknown 87.8
2785 Male, age 18, unknown 76.2
2588 Male, age 74, left hemisphere 53.7
2584 Male, age 75, left hemisphere 40.3
Substantia nigra
nTPM: 69.0
2699 Male, age 18, unknown 90.6
1851 Male, age 51, unknown 80.1
2409 Female, age 72, unknown 79.7
1889 Female, age 72, unknown 72.1
2241 Male, age 72, unknown 68.8
1916 Female, age 42, unknown 67.4
2590 Female, age 75, unknown 66.3
1941 Male, age 53, unknown 60.6
2583 Male, age 75, right hemisphere 59.1
2665 Male, age 74, both hemispheres 45.0
Superior colliculus
nTPM: 80.7
1995 Male, age 72, unknown 128.0
1913 Female, age 42, unknown 106.0
1895 Male, age 76, right hemisphere 84.9
2587 Male, age 74, left hemisphere 78.4
1796 Male, age 53, unknown 75.0
1839 Male, age 51, unknown 74.4
2668 Female, age 75, unknown 69.2
2087 Female, age 72, unknown 67.9
2664 Male, age 75, both hemispheres 62.9
2261 Male, age 18, unknown 60.5
Ventral tegmental area
nTPM: 74.8
2410 Female, age 72, unknown 89.0
1915 Female, age 42, unknown 73.5
2021 Male, age 53, unknown 72.8
2223 Female, age 72, unknown 72.3
2218 Male, age 76, both hemispheres 71.3
1942 Male, age 51, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 103.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.1
Samples: 139

Max nTPM: 198.5
Min nTPM: 27.5
Std nTPM: 33.8
Median nTPM: 98.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 198.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 180.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 175.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 169.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 168.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 167.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 165.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 164.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 160.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 160.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 160.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 310.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 310.1
FF:10158-103A5 76 years, female 310.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 192.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 179.3
Samples: 4

Max nTPM: 214.5
Min nTPM: 165.8
Sample A Female 214.5
Sample B Female 165.8
Sample C Male 170.2
Sample D Male 166.6
Midbrain
nTPM: 192.9
Samples: 4

Max nTPM: 329.2
Min nTPM: 105.2
Sample A Female 329.2
Sample B Female 186.8
Sample C Male 150.4
Sample D Male 105.2
Periaqueductal gray
nTPM: 184.9
Samples: 3

Max nTPM: 216.1
Min nTPM: 164.9
Sample B Female 216.1
Sample C Male 164.9
Sample D Male 173.6
Superior colliculi
nTPM: 136.1
Samples: 4

Max nTPM: 158.9
Min nTPM: 90.3
Sample A Female 158.9
Sample B Female 90.3
Sample C Male 150.2
Sample D Male 145.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 150.4
Min nTPM: 130.1
Sample A Male 138.0
Sample B Male 130.1
Sample C Female 146.5
Sample D Female 150.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
76081936 Antisense, RP_060626_01_B01, Mouse strain C57BL/6J (56 days, male) 4.9

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