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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Medium
Inner nuclear layer:
Medium
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Medium
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
101.1
nTPM
GTEx:
101.1
nTPM
FANTOM5:
30.0
Scaled Tags Per Million
Pig:
93.9
nTPM
Mouse:
179.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA074923
Pigment epithelial cells
Not detected
Photoreceptor cells
Low
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA075573
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 101.1
Samples: 105
Max nTPM: 243.1
Min nTPM: 17.6
Std nTPM: 46.0
Median nTPM:
352_1
62 years, male
243.1
356_1
87 years, female
202.5
218_1
71 years, female
197.8
237_1
82 years, male
197.3
355_1
70 years, female
192.1
354_1
81 years, female
185.2
349_1
83 years, male
182.7
394_1
75 years, female
178.6
172_1
72 years, female
167.8
350_1
84 years, female
167.3
163_1
78 years, male
167.2
375_1
74 years, female
162.1
243_1
75 years, male
161.2
319_1
81 years, male
147.8
353_1
82 years, female
145.5
286_1
68 years, female
145.3
292_1
71 years, male
144.5
99_1
64 years, male
140.6
335_1
73 years, female
140.2
229_1
69 years, female
139.9
379_1
60 years, male
139.9
447_1
81 years, male
139.9
452_1
88 years, female
139.2
347_1
72 years, male
137.8
503_1
68 years, male
137.3
386_1
76 years, male
136.5
506_1
65 years, male
134.4
351_1
91 years, male
131.9
177_1
74 years, male
128.4
320_1
89 years, female
128.2
376_1
75 years, female
127.8
425_1
59 years, female
127.3
389_1
86 years, female
126.0
318_1
68 years, male
123.1
264_1
73 years, female
122.0
377_1
82 years, female
116.1
384_1
83 years, male
114.6
406_1
79 years, male
114.5
291_1
76 years, male
114.4
293_1
68 years, female
113.6
217_1
76 years, male
108.6
266_1
85 years, male
106.4
251_1
78 years, male
105.6
517_1
88 years, male
105.2
246_1
77 years, male
104.5
265_1
87 years, male
104.2
35_1
74 years, female
101.6
499_1
55 years, female
100.7
404_1
82 years, female
100.5
189_1
76 years, male
100.1
316_1
62 years, male
99.7
348_1
84 years, male
99.7
321_1
62 years, female
99.3
396_1
62 years, male
99.3
295_1
61 years, female
97.5
173_1
67 years, male
97.0
317_1
60 years, male
95.6
468_1
89 years, male
93.5
526_1
61 years, male
92.7
405_1
91 years, male
91.6
42_1
85 years, male
90.9
313_1
79 years, female
87.9
9_1
66 years, female
87.3
254_1
77 years, female
85.6
324_1
76 years, male
83.2
480_1
63 years, male
82.6
115_1
83 years, male
80.4
137_1
83 years, male
78.8
6_1
73 years, female
75.9
322_1
76 years, male
72.1
314_1
67 years, male
72.0
32_1
67 years, male
70.9
311_1
78 years, male
70.8
518_1
75 years, female
70.4
126_1
63 years, male
69.9
142_1
61 years, female
69.1
153_1
70 years, female
68.1
415_1
77 years, female
65.5
288_1
66 years, female
64.3
315_1
62 years, female
64.2
109_1
81 years, female
64.0
117_1
61 years, male
63.3
120_1
70 years, female
62.4
81_1
67 years, male
60.8
18_1
88 years, male
60.4
4_1
88 years, female
58.8
162_1
79 years, female
55.5
17_1
71 years, male
54.7
145_1
84 years, male
54.6
307_1
66 years, female
51.4
466_1
57 years, female
50.3
43_1
64 years, female
49.2
119_1
70 years, female
49.0
414_1
84 years, female
48.4
41_1
94 years, female
45.8
2_1
77 years, female
38.2
139_1
64 years, female
38.0
89_1
63 years, male
37.5
490_1
67 years, female
35.8
501_1
88 years, male
33.6
149_1
88 years, male
33.4
495_1
57 years, female
29.4
308_1
70 years, female
25.3
413_1
59 years, female
18.9
491_1
89 years, female
17.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
