MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:7.8 nTPM
GTEx:9.9 nTPM
FANTOM5:3.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 7.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2586 Male, age 75, left hemisphere 9.4
1827 Male, age 72, unknown 6.9
1870 Female, age 42, unknown 6.6
2411 Female, age 72, unknown 6.4
2828 Female, age 72, unknown 6.2
2219 Male, age 76, both hemispheres 5.8
2019 Male, age 18, unknown 5.7
1830 Male, age 51, unknown 5.5
1833 Male, age 53, unknown 5.2
2666 Male, age 74, left hemisphere 4.6
Dorsal raphe nucleus
nTPM: 6.0
1828 Male, age 53, unknown 6.4
2016 Female, age 72, unknown 6.3
2047 Male, age 72, unknown 6.3
2298 Female, age 72, unknown 6.1
2750 Male, age 76, both hemispheres 5.2
Inferior colliculus
nTPM: 7.5
2097 Female, age 72, unknown 10.6
1890 Male, age 53, unknown 8.0
1848 Female, age 42, unknown 6.4
2849 Male, age 72, unknown 5.2
Median raphe nucleus
nTPM: 4.8
2220 Male, age 76, midline 4.8
Periaquaductal grey, anterior
nTPM: 7.8
1947 Male, age 18, unknown 9.0
1795 Male, age 51, unknown 8.0
2502 Female, age 75, unknown 6.5
Periaquaductal grey, dorsal
nTPM: 5.9
1840 Male, age 53, unknown 7.1
1831 Male, age 72, unknown 5.8
2850 Male, age 76, both hemispheres 5.5
2464 Female, age 72, unknown 5.0
Periaquaductal grey, lateral
nTPM: 6.8
2272 Male, age 74, both hemispheres 7.6
2053 Male, age 18, unknown 6.7
2140 Male, age 76, both hemispheres 5.9
Pretectal area
nTPM: 7.2
2273 Male, age 74, both hemispheres 9.7
2007 Male, age 72, unknown 8.1
1944 Female, age 72, unknown 7.8
1817 Female, age 42, unknown 7.6
2224 Female, age 72, unknown 7.5
2825 Male, age 18, unknown 7.0
1816 Male, age 51, unknown 6.8
2667 Female, age 75, unknown 6.7
2407 Male, age 75, both hemispheres 6.5
1815 Male, age 53, unknown 6.2
2316 Male, age 76, right hemisphere 5.5
Red nucleus
nTPM: 6.3
1821 Female, age 72, unknown 8.0
2227 Male, age 72, unknown 7.3
1954 Female, age 42, unknown 7.1
2584 Male, age 75, left hemisphere 6.8
2769 Male, age 72, unknown 6.6
1865 Male, age 51, unknown 6.5
2785 Male, age 18, unknown 5.9
2823 Male, age 76, right hemisphere 5.9
1904 Male, age 53, unknown 5.7
2588 Male, age 74, left hemisphere 5.6
2503 Female, age 72, unknown 5.5
2725 Female, age 75, unknown 5.3
Substantia nigra
nTPM: 7.1
2583 Male, age 75, right hemisphere 8.5
1916 Female, age 42, unknown 8.4
1851 Male, age 51, unknown 8.2
2590 Female, age 75, unknown 7.5
1941 Male, age 53, unknown 7.3
2241 Male, age 72, unknown 7.1
2665 Male, age 74, both hemispheres 6.6
1889 Female, age 72, unknown 6.1
2699 Male, age 18, unknown 5.9
2409 Female, age 72, unknown 5.1
Superior colliculus
nTPM: 7.5
2664 Male, age 75, both hemispheres 10.6
2668 Female, age 75, unknown 10.3
2261 Male, age 18, unknown 8.8
1796 Male, age 53, unknown 8.4
1839 Male, age 51, unknown 7.0
2087 Female, age 72, unknown 6.6
1995 Male, age 72, unknown 6.4
2587 Male, age 74, left hemisphere 6.4
1895 Male, age 76, right hemisphere 6.2
1913 Female, age 42, unknown 4.7
Ventral tegmental area
nTPM: 6.7
1915 Female, age 42, unknown 8.5
2410 Female, age 72, unknown 6.8
2223 Female, age 72, unknown 6.6
1942 Male, age 51, unknown 6.5
2021 Male, age 53, unknown 6.0
2218 Male, age 76, both hemispheres 5.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 24.7
Min nTPM: 3.2
Std nTPM: 3.2
Median nTPM: 9.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 24.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 19.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 18.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 17.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 15.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 15.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 14.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

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