MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:56.0 nTPM
GTEx:29.4 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:58.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.8
2586 Male, age 75, left hemisphere 52.5
1827 Male, age 72, unknown 50.9
2666 Male, age 74, left hemisphere 47.9
2828 Female, age 72, unknown 47.8
1833 Male, age 53, unknown 46.9
2219 Male, age 76, both hemispheres 45.8
1870 Female, age 42, unknown 45.5
2019 Male, age 18, unknown 44.5
2411 Female, age 72, unknown 43.9
1830 Male, age 51, unknown 42.7
Dorsal raphe nucleus
nTPM: 46.1
2298 Female, age 72, unknown 51.0
2750 Male, age 76, both hemispheres 48.7
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 45.1
2016 Female, age 72, unknown 40.0
Inferior colliculus
nTPM: 44.9
2097 Female, age 72, unknown 47.9
1848 Female, age 42, unknown 45.0
1890 Male, age 53, unknown 43.7
2849 Male, age 72, unknown 43.1
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Periaquaductal grey, anterior
nTPM: 48.8
1947 Male, age 18, unknown 52.0
1795 Male, age 51, unknown 47.6
2502 Female, age 75, unknown 46.7
Periaquaductal grey, dorsal
nTPM: 48.1
2850 Male, age 76, both hemispheres 56.0
1831 Male, age 72, unknown 49.7
1840 Male, age 53, unknown 46.2
2464 Female, age 72, unknown 40.5
Periaquaductal grey, lateral
nTPM: 49.1
2272 Male, age 74, both hemispheres 50.9
2140 Male, age 76, both hemispheres 49.7
2053 Male, age 18, unknown 46.8
Pretectal area
nTPM: 54.1
1816 Male, age 51, unknown 70.9
1817 Female, age 42, unknown 61.1
1944 Female, age 72, unknown 59.4
2667 Female, age 75, unknown 54.1
1815 Male, age 53, unknown 53.7
2007 Male, age 72, unknown 53.3
2273 Male, age 74, both hemispheres 53.1
2224 Female, age 72, unknown 51.4
2825 Male, age 18, unknown 47.5
2407 Male, age 75, both hemispheres 45.9
2316 Male, age 76, right hemisphere 44.7
Red nucleus
nTPM: 49.5
1821 Female, age 72, unknown 57.3
1954 Female, age 42, unknown 54.9
1904 Male, age 53, unknown 53.9
2503 Female, age 72, unknown 52.3
2725 Female, age 75, unknown 51.2
1865 Male, age 51, unknown 49.7
2227 Male, age 72, unknown 49.4
2785 Male, age 18, unknown 47.5
2769 Male, age 72, unknown 47.2
2584 Male, age 75, left hemisphere 46.1
2823 Male, age 76, right hemisphere 45.4
2588 Male, age 74, left hemisphere 38.7
Substantia nigra
nTPM: 50.8
1916 Female, age 42, unknown 58.2
2583 Male, age 75, right hemisphere 54.6
1851 Male, age 51, unknown 53.2
1889 Female, age 72, unknown 53.1
2241 Male, age 72, unknown 51.7
2699 Male, age 18, unknown 51.7
1941 Male, age 53, unknown 51.1
2590 Female, age 75, unknown 46.8
2409 Female, age 72, unknown 45.1
2665 Male, age 74, both hemispheres 42.9
Superior colliculus
nTPM: 50.6
2261 Male, age 18, unknown 59.5
2087 Female, age 72, unknown 59.1
2668 Female, age 75, unknown 54.1
1796 Male, age 53, unknown 52.5
1913 Female, age 42, unknown 50.6
2664 Male, age 75, both hemispheres 49.8
1995 Male, age 72, unknown 48.4
2587 Male, age 74, left hemisphere 45.2
1839 Male, age 51, unknown 44.0
1895 Male, age 76, right hemisphere 42.3
Ventral tegmental area
nTPM: 51.7
2223 Female, age 72, unknown 56.8
2218 Male, age 76, both hemispheres 56.4
1915 Female, age 42, unknown 53.4
2410 Female, age 72, unknown 49.0
2021 Male, age 53, unknown 47.3
1942 Male, age 51, unknown 47.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.4
Samples: 139

Max nTPM: 76.9
Min nTPM: 18.3
Std nTPM: 7.0
Median nTPM: 28.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 76.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 46.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 40.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 39.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 39.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 37.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 37.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.0
Samples: 4

Max nTPM: 75.4
Min nTPM: 48.5
Sample A Female 75.4
Sample B Female 54.5
Sample C Male 48.5
Sample D Male 53.7
Midbrain
nTPM: 67.6
Samples: 4

Max nTPM: 84.6
Min nTPM: 55.9
Sample A Female 84.6
Sample B Female 55.9
Sample C Male 69.9
Sample D Male 60.1
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 62.2
Min nTPM: 52.9
Sample B Female 52.9
Sample C Male 62.2
Sample D Male 55.2
Superior colliculi
nTPM: 68.6
Samples: 4

Max nTPM: 81.2
Min nTPM: 59.1
Sample A Female 81.2
Sample B Female 73.9
Sample C Male 59.1
Sample D Male 60.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.7
Samples: 4

Max nTPM: 61.1
Min nTPM: 55.1
Sample A Male 55.1
Sample B Male 61.1
Sample C Female 60.6
Sample D Female 57.9

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