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GJA10
HPA
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  • GJA10
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GJA10
Synonyms CX62
Gene descriptioni

Full gene name according to HGNC.

Gap junction protein alpha 10
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at transcript level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband q15
Chromosome location (bp) 89894469 - 89921760
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000135355 (version 109)
Entrez gene 84694
HGNC HGNC:16995
UniProt Q969M2 (UniProt - Evidence at transcript level)
neXtProt NX_Q969M2
GeneCards GJA10
Antibodypedia GJA10 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. Involved in tracer coupling between horizontal cells of the retina. May play a role in the regulation of horizontal cell patterning (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Connexins, such as GJA10, are involved in the formation of gap junctions, intercellular conduits that directly connect the cytoplasms of contacting cells. Each gap junction channel is formed by docking of 2 hemichannels, each of which contains 6 connexin subunits (Sohl et al., 2003).[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GJA10-201
ENSP00000358358
ENST00000369352
Q969M2
[Direct mapping] Gap junction alpha-10 protein
Show all
A0A654ICQ6
[Target identity:100%; Query identity:100%] Gap junction protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at transcript level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005243 [gap junction channel activity]
GO:0005886 [plasma membrane]
GO:0005921 [gap junction]
GO:0005922 [connexin complex]
GO:0007154 [cell communication]
GO:0007267 [cell-cell signaling]
GO:0007276 [gamete generation]
GO:0007416 [synapse assembly]
GO:0009416 [response to light stimulus]
GO:0016020 [membrane]
GO:0050908 [detection of light stimulus involved in visual perception]
GO:0055085 [transmembrane transport]
GO:0070161 [anchoring junction]
Show all
543 aa
61.9 kDa
No 4
GJA10-203
ENSP00000492666
ENST00000638915
A0A1W2PS75
[Direct mapping] Gap junction protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005921 [gap junction]
GO:0005922 [connexin complex]
GO:0007154 [cell communication]
GO:0016020 [membrane]
GO:0070161 [anchoring junction]
Show all
492 aa
56.1 kDa
No 4

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