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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:267.4 nTPM
GTEx:267.4 nTPM
FANTOM5:137.3 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:17.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 267.4
Samples: 105

Max nTPM: 389.2
Min nTPM: 51.7
Std nTPM: 72.5
Median nTPM:
218_1 71 years, female 389.2
452_1 88 years, female 381.9
377_1 82 years, female 373.1
384_1 83 years, male 372.6
319_1 81 years, male 365.8
394_1 75 years, female 356.5
386_1 76 years, male 351.4
375_1 74 years, female 346.7
379_1 60 years, male 343.9
354_1 81 years, female 343.0
321_1 62 years, female 342.5
322_1 76 years, male 342.3
17_1 71 years, male 342.2
349_1 83 years, male 342.2
173_1 67 years, male 341.1
163_1 78 years, male 340.6
320_1 89 years, female 338.1
172_1 72 years, female 336.6
506_1 65 years, male 336.2
243_1 75 years, male 327.4
447_1 81 years, male 326.7
6_1 73 years, female 325.4
189_1 76 years, male 325.2
4_1 88 years, female 323.8
376_1 75 years, female 323.1
246_1 77 years, male 320.2
153_1 70 years, female 317.6
318_1 68 years, male 316.5
295_1 61 years, female 316.4
177_1 74 years, male 312.6
355_1 70 years, female 312.1
389_1 86 years, female 311.7
425_1 59 years, female 309.1
396_1 62 years, male 307.6
115_1 83 years, male 306.5
352_1 62 years, male 306.0
237_1 82 years, male 304.1
503_1 68 years, male 304.1
351_1 91 years, male 304.0
229_1 69 years, female 303.3
316_1 62 years, male 303.2
350_1 84 years, female 302.5
404_1 82 years, female 300.6
526_1 61 years, male 299.4
317_1 60 years, male 299.1
99_1 64 years, male 297.0
35_1 74 years, female 294.2
353_1 82 years, female 291.4
405_1 91 years, male 290.8
286_1 68 years, female 290.5
406_1 79 years, male 289.8
356_1 87 years, female 289.0
335_1 73 years, female 286.3
145_1 84 years, male 284.8
2_1 77 years, female 283.9
264_1 73 years, female 280.2
265_1 87 years, male 277.4
137_1 83 years, male 275.3
347_1 72 years, male 271.4
120_1 70 years, female 268.9
348_1 84 years, male 267.9
254_1 77 years, female 267.1
42_1 85 years, male 266.4
292_1 71 years, male 265.4
293_1 68 years, female 264.3
41_1 94 years, female 260.8
291_1 76 years, male 256.8
480_1 63 years, male 255.1
18_1 88 years, male 251.3
251_1 78 years, male 247.4
109_1 81 years, female 244.7
517_1 88 years, male 242.1
288_1 66 years, female 235.0
126_1 63 years, male 233.8
9_1 66 years, female 232.0
311_1 78 years, male 230.3
266_1 85 years, male 229.5
217_1 76 years, male 229.0
468_1 89 years, male 227.8
324_1 76 years, male 227.3
314_1 67 years, male 227.2
139_1 64 years, female 222.0
142_1 61 years, female 221.1
117_1 61 years, male 220.4
499_1 55 years, female 215.7
307_1 66 years, female 215.2
518_1 75 years, female 208.7
313_1 79 years, female 202.2
81_1 67 years, male 196.8
119_1 70 years, female 192.0
315_1 62 years, female 180.4
162_1 79 years, female 175.2
495_1 57 years, female 174.3
308_1 70 years, female 171.4
32_1 67 years, male 167.4
43_1 64 years, female 159.6
501_1 88 years, male 136.6
89_1 63 years, male 134.0
415_1 77 years, female 132.6
466_1 57 years, female 129.8
414_1 84 years, female 125.2
149_1 88 years, male 97.1
413_1 59 years, female 66.0
490_1 67 years, female 55.3
491_1 89 years, female 51.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 137.3
FF:10030-101E3 24-65 years, mixed 137.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.8
Pig sample Sample description nTPM
Retina
nTPM: 41.8
Samples: 4

Max nTPM: 45.2
Min nTPM: 39.2
Sample A Female 39.2
Sample B Female 41.3
Sample C Male 41.6
Sample D Male 45.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.4
Mouse sample Sample description nTPM
Retina
nTPM: 17.4
Samples: 4

Max nTPM: 21.7
Min nTPM: 11.6
Sample A Male 19.1
Sample B Male 17.2
Sample C Female 21.7
Sample D Female 11.6

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