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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:147.2 nTPM
HPA Brain:322.6 nTPM
GTEx:147.2 nTPM
FANTOM5:501.9 Scaled Tags Per Million
Pig:222.5 nTPM
Mouse:374.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.6
Sample id Sample description nTPM
Amygdala
nTPM: 153.2
2517 Female, age 94, left hemisphere 230.4
1987 Female, age 91, left hemisphere 227.1
2514 Male, age 75, right hemisphere 175.3
2814 Male, age 76, right hemisphere 75.5
2695 Female, age 67, right hemisphere 57.5
Basal amygdala
nTPM: 322.6
2243 Female, age 91, right hemisphere 445.3
2685 Female, age 94, left hemisphere 415.1
2827 Female, age 67, right hemisphere 393.4
2609 Male, age 75, right hemisphere 269.5
2110 Male, age 80, left hemisphere 252.8
1955 Male, age 76, both hemispheres 159.6
Central amygdala
nTPM: 217.1
2826 Female, age 94, left hemisphere 351.8
2239 Male, age 80, left hemisphere 300.3
2515 Male, age 75, right hemisphere 185.6
2701 Female, age 91, right hemisphere 174.2
1905 Male, age 76, both hemispheres 73.4
Corticomedial amygdala
nTPM: 311.7
2535 Female, age 67, right hemisphere 434.1
2242 Female, age 91, right hemisphere 406.5
2829 Male, age 80, left hemisphere 354.3
2429 Female, age 94, left hemisphere 297.5
2428 Male, age 75, right hemisphere 235.2
2240 Male, age 76, both hemispheres 142.4
Lateral amygdala
nTPM: 230.7
2534 Female, age 94, left hemisphere 329.1
2256 Male, age 80, left hemisphere 298.7
2255 Female, age 91, right hemisphere 293.5
2830 Female, age 67, right hemisphere 217.9
1883 Male, age 76, both hemispheres 125.3
2516 Male, age 75, right hemisphere 119.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 147.2
Samples: 152

Max nTPM: 353.2
Min nTPM: 3.1
Std nTPM: 76.6
Median nTPM: 141.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 353.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 312.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 306.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 302.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 292.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 288.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 288.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 281.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 279.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 272.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 271.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 267.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 264.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 263.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 263.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 262.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 259.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 252.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 248.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 247.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 233.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 231.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 230.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 225.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 224.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 224.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 223.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 222.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 219.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 217.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 215.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 211.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 210.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 205.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 203.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 202.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 202.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 202.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 200.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 199.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 196.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 195.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 193.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 192.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 189.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 189.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 187.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 186.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 180.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 179.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 177.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 176.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 175.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 169.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 166.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 165.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 165.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 162.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 155.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 153.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 150.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 148.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 145.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 140.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 126.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 124.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 124.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 121.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 118.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 114.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 107.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 104.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 101.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 101.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 100.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 100.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 97.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 92.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 91.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 81.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 79.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 77.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 76.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 75.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 74.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 72.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 72.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 71.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 60.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 59.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 57.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 55.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 46.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 42.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 36.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 31.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 20.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

501.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 501.9
FF:10151-102I7 76 years, female 501.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.5
Pig sample Sample description nTPM
Amygdala
nTPM: 222.5
Samples: 4

Max nTPM: 269.2
Min nTPM: 160.2
Sample A Female 269.2
Sample B Female 160.2
Sample C Male 237.9
Sample D Male 222.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 374.7
Samples: 4

Max nTPM: 434.7
Min nTPM: 319.3
Sample A Male 319.3
Sample B Male 389.4
Sample C Female 434.7
Sample D Female 355.4

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