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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.3 nTPM
HPA Brain:142.0 nTPM
GTEx:82.3 nTPM
FANTOM5:302.6 Scaled Tags Per Million
Pig:127.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 131.9
2816 Male, age 47, midline 148.9
2048 Male, age 55, midline 143.0
2194 Female, age 79, both hemispheres 131.7
1981 Female, age 72, midline 125.2
2565 Male, age 75, midline 110.7
Cervical spinal cord, dorsal horn
nTPM: 139.6
2296 Male, age 66, both hemispheres 221.1
2173 Female, age 72, unknown 164.1
1877 Male, age 55, unknown 127.4
2069 Male, age 47, both hemispheres 121.9
2721 Male, age 90, both hemispheres 108.0
2297 Male, age 75, both hemispheres 94.9
Cervical spinal cord, ventral horn
nTPM: 142.0
2068 Male, age 55, unknown 161.4
2820 Female, age 79, both hemispheres 160.9
2098 Female, age 72, unknown 140.2
2809 Male, age 90, both hemispheres 139.9
2480 Male, age 75, both hemispheres 132.0
2295 Male, age 66, both hemispheres 117.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 82.3
Samples: 159

Max nTPM: 148.9
Min nTPM: 27.6
Std nTPM: 22.4
Median nTPM: 83.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 148.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 142.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 122.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 121.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 120.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 119.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 118.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 116.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 114.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 114.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 111.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 110.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 109.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 109.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 109.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 107.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 107.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 106.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 105.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 105.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 104.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 104.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 103.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 102.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 102.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 102.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 102.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 101.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 101.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 99.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 99.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 97.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 96.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 96.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 95.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 95.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 95.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 94.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 94.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 93.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 93.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 93.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 92.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 91.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 91.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 91.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 91.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 90.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 90.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 90.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 89.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 89.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 89.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 89.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 89.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 89.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 88.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 87.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 87.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 87.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 86.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 86.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 86.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 85.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 85.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 84.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 84.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 83.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 83.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 81.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 81.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 81.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 80.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 80.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 79.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 79.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 78.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 78.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 78.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 77.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 77.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 76.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 74.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 73.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 73.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 73.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 70.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 70.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 68.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 68.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 68.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 67.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 67.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 67.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 66.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 65.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 65.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 63.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 62.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 62.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 62.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 61.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 61.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 60.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 58.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 57.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 57.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 56.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 54.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 51.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 48.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 47.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 47.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 47.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 44.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 37.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 33.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 30.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 27.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 302.6
FF:10159-103A6 76 years, female 331.1
FF:10181-103D1 60 years, female 274.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 99.9
Samples: 4

Max nTPM: 123.9
Min nTPM: 72.5
Sample A Female 103.5
Sample B Female 99.7
Sample C Male 72.5
Sample D Male 123.9
Ventral spinal cord
nTPM: 127.4
Samples: 4

Max nTPM: 164.4
Min nTPM: 103.7
Sample A Female 126.6
Sample B Female 114.8
Sample C Male 103.7
Sample D Male 164.4

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