HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		85.578
RNA expressioni
Consensus:39.6 nTPM
HPA Brain:40.8 nTPM
GTEx:39.6 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:59.3 nTPM
Allen mouse:6.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA072287
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA072287
Hippocampal formation mean intensity 85.578
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 41.884
Molecular layer of the dentate gyrus 45.679
Granular dentate gyrus 42.016
CA1 - oriens layer 39.328
CA1 - pyramidal layer 43.556
CA1 - radiatum layer 41.877
CA2 - oriens layer 60.442
CA2 - pyramidal layer 85.578
CA2 - radiatum layer 63.736
CA3 - oriens layer 58.156
CA3 - pyramidal layer 68.445
CA3 - radiatum layer 61.380
Stratum lucidum 56.754
Lacunosum moleculare 43.080
Subiculum 31.603

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 40.8
Sample id Sample description nTPM
Hippocampus
nTPM: 32.4
1898 Male, age 80, left hemisphere 35.7
2621 Female, age 67, right hemisphere 35.6
2148 Female, age 91, left hemisphere 33.0
1911 Female, age 85, right hemisphere 32.4
1855 Male, age 76, left hemisphere 31.5
2529 Female, age 94, left hemisphere 26.0
Dentate gyrus
nTPM: 36.5
2530 Female, age 94, left hemisphere 47.9
1927 Female, age 91, both hemispheres 35.7
2010 Male, age 76, both hemispheres 35.5
2531 Female, age 67, both hemispheres 34.0
2246 Female, age 85, both hemispheres 33.7
2528 Male, age 74, both hemispheres 32.1
Entorhinal gyrus
nTPM: 40.8
2613 Female, age 94, left hemisphere 51.5
1938 Female, age 85, left hemisphere 45.6
2117 Female, age 91, right hemisphere 43.9
2764 Male, age 80, right hemisphere 41.3
1787 Male, age 76, left hemisphere 32.5
2686 Male, age 75, right hemisphere 30.0
Hippocampus, CA1
nTPM: 32.9
1873 Female, age 85, both hemispheres 42.1
2749 Male, age 80, left hemisphere 40.0
2082 Female, age 91, right hemisphere 32.6
2527 Male, age 74, both hemispheres 27.8
2045 Male, age 76, both hemispheres 21.8
Hippocampus, CA2
nTPM: 35.1
1963 Male, age 80, left hemisphere 49.7
1892 Male, age 76, both hemispheres 33.9
2437 Female, age 94, left hemisphere 32.9
1940 Female, age 85, left hemisphere 32.0
2249 Male, age 74, both hemispheres 31.1
2113 Female, age 91, right hemisphere 31.0
Hippocampus, CA3
nTPM: 28.2
1891 Female, age 85, both hemispheres 40.8
1867 Male, age 76, both hemispheres 29.9
2620 Female, age 94, left hemisphere 28.2
2861 Female, age 67, both hemispheres 26.8
2137 Male, age 80, left hemisphere 22.5
2436 Male, age 74, both hemispheres 20.6
Parahippocampal cortex
nTPM: 30.9
2532 Female, age 72, left hemisphere 41.6
1990 Female, age 91, right hemisphere 40.0
1933 Female, age 85, both hemispheres 35.3
1850 Male, age 80, both hemispheres 35.2
2692 Male, age 74, both hemispheres 33.5
2245 Female, age 91, both hemispheres 28.6
2693 Female, age 94, both hemispheres 28.5
2018 Male, age 76, both hemispheres 25.4
2622 Female, age 67, right hemisphere 21.1
2250 Female, age 67, right hemisphere 19.7
Perirhinal gyrus
nTPM: 30.3
1841 Female, age 85, right hemisphere 34.3
1847 Female, age 91, left hemisphere 34.0
1794 Male, age 80, right hemisphere 28.9
2521 Female, age 94, right hemisphere 28.1
2848 Male, age 76, right hemisphere 26.1
Subiculum
nTPM: 37.3
1977 Female, age 85, both hemispheres 46.9
2042 Male, age 76, both hemispheres 42.9
1901 Male, age 80, both hemispheres 41.2
2438 Female, age 94, left hemisphere 34.7
2729 Female, age 91, right hemisphere 30.5
2619 Male, age 74, both hemispheres 27.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 39.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.6
Samples: 197

Max nTPM: 137.5
Min nTPM: 13.2
Std nTPM: 18.5
Median nTPM: 34.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 137.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 131.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 117.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 108.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 95.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 93.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 85.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 83.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 72.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 69.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 66.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 93.1
FF:10153-102I9 76 years, female 95.9
FF:10169-103B7 60 years, female 90.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 16.7
Pig sample Sample description nTPM
Subiculum
nTPM: 15.1
Samples: 4

Max nTPM: 22.1
Min nTPM: 11.8
Sample A Female 22.1
Sample B Female 14.1
Sample C Male 11.8
Sample D Male 12.4
Dorsal hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.3
Sample A Female 16.4
Sample B Female 14.3
Sample C Male 12.4
Sample D Male 12.3
Entorhinal cortex
nTPM: 16.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.4
Sample A Female 16.3
Sample B Female 14.4
Sample C Male 19.6
Sample D Male 16.4
Ventral hippocampus
nTPM: 9.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.6
Sample A Female 9.5
Sample B Female 8.6
Sample C Male 10.1
Sample D Male 9.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 59.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.3
Samples: 4

Max nTPM: 68.7
Min nTPM: 50.8
Sample A Male 65.6
Sample B Male 68.7
Sample C Female 50.8
Sample D Female 52.2
Hippocampal formation
nTPM: 46.3
Samples: 4

Max nTPM: 50.4
Min nTPM: 43.7
Sample A Male 43.7
Sample B Male 50.4
Sample C Female 44.6
Sample D Female 46.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.0
70593143 Antisense, RP_050331_03_G01, Mouse strain C57BL/6J (56 days, male) 6.8
72283793 Antisense, RP_051027_01_A09, Mouse strain C57BL/6J (56 days, male) 5.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org