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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:260.4 nTPM
HPA Brain:297.0 nTPM
GTEx:260.4 nTPM
FANTOM5:292.9 Scaled Tags Per Million
Pig:162.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 213.5
2565 Male, age 75, midline 243.8
2048 Male, age 55, midline 232.9
2194 Female, age 79, both hemispheres 201.7
1981 Female, age 72, midline 199.6
2816 Male, age 47, midline 189.4
Cervical spinal cord, dorsal horn
nTPM: 182.5
2173 Female, age 72, unknown 240.4
2296 Male, age 66, both hemispheres 212.2
2069 Male, age 47, both hemispheres 192.2
1877 Male, age 55, unknown 167.8
2297 Male, age 75, both hemispheres 148.1
2721 Male, age 90, both hemispheres 134.4
Cervical spinal cord, ventral horn
nTPM: 297.0
2480 Male, age 75, both hemispheres 469.2
2809 Male, age 90, both hemispheres 381.0
2295 Male, age 66, both hemispheres 307.3
2820 Female, age 79, both hemispheres 211.7
2098 Female, age 72, unknown 209.6
2068 Male, age 55, unknown 203.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 260.4
Samples: 159

Max nTPM: 658.6
Min nTPM: 106.9
Std nTPM: 105.0
Median nTPM: 241.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 658.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 585.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 578.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 560.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 557.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 513.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 485.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 484.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 481.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 474.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 466.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 455.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 452.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 425.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 409.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 406.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 403.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 398.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 390.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 385.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 378.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 374.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 361.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 356.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 355.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 352.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 348.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 339.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 339.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 337.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 336.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 333.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 330.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 324.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 316.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 313.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 311.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 298.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 297.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 296.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 295.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 292.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 291.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 289.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 288.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 286.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 285.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 283.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 282.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 281.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 281.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 278.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 276.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 274.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 273.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 273.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 267.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 265.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 264.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 261.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 261.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 258.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 257.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 257.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 251.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 250.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 249.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 248.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 247.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 247.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 247.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 245.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 245.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 245.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 243.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 243.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 242.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 242.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 241.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 241.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 240.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 239.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 236.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 236.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 233.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 232.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 232.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 231.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 229.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 229.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 229.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 228.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 227.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 227.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 227.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 224.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 223.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 223.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 220.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 219.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 218.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 216.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 212.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 209.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 207.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 205.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 203.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 202.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 199.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 198.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 193.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 193.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 192.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 191.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 189.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 187.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 185.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 184.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 184.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 182.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 182.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 182.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 181.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 181.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 179.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 175.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 174.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 173.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 173.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 173.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 172.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 171.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 168.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 167.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 166.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 163.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 160.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 159.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 157.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 154.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 153.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 151.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 149.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 145.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 144.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 141.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 141.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 141.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 140.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 137.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 134.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 130.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 114.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 110.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 106.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

292.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 292.9
FF:10181-103D1 60 years, female 313.2
FF:10159-103A6 76 years, female 272.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 141.0
Samples: 4

Max nTPM: 150.3
Min nTPM: 127.3
Sample A Female 138.0
Sample B Female 150.3
Sample C Male 127.3
Sample D Male 148.3
Ventral spinal cord
nTPM: 162.2
Samples: 4

Max nTPM: 186.8
Min nTPM: 147.5
Sample A Female 160.5
Sample B Female 153.8
Sample C Male 147.5
Sample D Male 186.8

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