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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 84.6
2188
Female, age 91, both hemispheres
112.1
2090
Male, age 80, both hemispheres
93.4
2301
Female, age 85, both hemispheres
90.9
1984
Male, age 76, both hemispheres
41.9
Dorsal cochlear nucleus nTPM: 62.7
2187
Female, age 91, both hemispheres
79.6
2378
Male, age 80, both hemispheres
77.1
2802
Male, age 74, right hemisphere
57.2
2058
Male, age 76, both hemispheres
50.4
2370
Male, age 61, both hemispheres
49.0
Dorsal tegmental nucleus nTPM: 60.5
2083
Male, age 80, both hemispheres
75.1
2326
Male, age 74, both hemispheres
62.7
1936
Male, age 76, left hemisphere
54.7
2358
Male, age 61, both hemispheres
49.6
Dorsolateral tegmental area nTPM: 69.6
2337
Male, age 61, both hemispheres
94.2
2751
Female, age 85, both hemispheres
92.6
2654
Male, age 80, both hemispheres
70.9
2360
Male, age 74, both hemispheres
46.2
2141
Male, age 76, both hemispheres
44.1
Kolliker-Fuse nucleus nTPM: 86.3
2793
Female, age 91, left hemisphere
126.9
2163
Male, age 80, both hemispheres
66.1
2315
Male, age 76, right hemisphere
65.9
Lateral lemniscal nuclei nTPM: 75.8
2320
Female, age 91, left hemisphere
93.0
2746
Female, age 85, left hemisphere
89.7
2036
Male, age 80, both hemispheres
66.5
2453
Male, age 74, right hemisphere
65.6
2169
Male, age 76, both hemispheres
64.1
Lateral parabrachial nucleus nTPM: 77.6
2792
Male, age 76, both hemispheres
109.8
2013
Male, age 80, both hemispheres
83.8
2790
Male, age 61, both hemispheres
60.6
2139
Female, age 85, right hemisphere
56.1
Lateral vestibular nucleus nTPM: 67.0
2311
Male, age 80, both hemispheres
72.6
2184
Male, age 76, both hemispheres
61.3
Locus coeruleus nTPM: 42.5
2720
Male, age 74, both hemispheres
55.7
2162
Male, age 80, both hemispheres
52.2
2788
Male, age 74, unknown
47.1
2317
Female, age 72, unknown
37.1
2123
Female, age 91, both hemispheres
36.5
2014
Male, age 55, unknown
35.8
1980
Male, age 76, both hemispheres
33.3
Medial parabrachial nucleus nTPM: 70.8
2854
Male, age 80, both hemispheres
91.2
2170
Female, age 91, both hemispheres
74.0
2786
Male, age 76, both hemispheres
70.8
2463
Female, age 85, right hemisphere
69.0
2156
Male, age 61, both hemispheres
48.9
Medial periolivary nuclei nTPM: 72.5
2081
Male, age 80, both hemispheres
97.0
2458
Female, age 91, both hemispheres
86.3
2791
Male, age 74, right hemisphere
71.2
2171
Female, age 85, both hemispheres
54.7
2063
Male, age 76, both hemispheres
53.2
Motor facial nucleus nTPM: 72.1
2697
Female, age 85, both hemispheres
111.9
2365
Male, age 74, right hemisphere
79.5
2126
Male, age 61, both hemispheres
73.7
2795
Female, age 91, both hemispheres
62.6
2327
Male, age 80, both hemispheres
59.9
2062
Male, age 76, both hemispheres
45.1
Motor trigeminal nucleus nTPM: 70.4
2321
Female, age 91, both hemispheres
81.9
2560
Male, age 74, both hemispheres
75.9
2079
Male, age 80, both hemispheres
73.5
2309
Male, age 76, both hemispheres
64.3
2335
Male, age 61, both hemispheres
56.4
Nuclei of the trapezoid body nTPM: 61.8
2166
Male, age 80, both hemispheres
85.2
2368
Female, age 91, both hemispheres
69.5
2159
Male, age 61, both hemispheres
59.8
1983
Male, age 76, both hemispheres
51.8
2735
Female, age 85, both hemispheres
42.7
Nucleus raphe magnus nTPM: 64.0
2051
Male, age 76, both hemispheres
83.4
2459
Female, age 91, both hemispheres
80.7
2328
Male, age 80, both hemispheres
74.4
2455
Male, age 74, both hemispheres
62.4
2172
Female, age 85, both hemispheres
44.0
2160
Male, age 61, both hemispheres
39.4
Paramedian reticular nucleus nTPM: 73.5
2052
Male, age 76, both hemispheres
99.5
2050
Female, age 85, both hemispheres
74.9
2057
Male, age 80, both hemispheres
61.6
2313
Male, age 61, both hemispheres
58.1
Pedunculopontine tegmental nucleus nTPM: 68.3
2338
Male, age 61, both hemispheres
85.7
2334
Male, age 80, both hemispheres
64.7
1921
Female, age 85, both hemispheres
54.6
Pontine nuclei nTPM: 78.0
2454
Male, age 74, left hemisphere
108.3
2319
Female, age 91, both hemispheres
106.0
2115
Male, age 80, left hemisphere
99.2
2109
Female, age 72, unknown
80.1
1968
Male, age 76, left hemisphere
66.7
2727
Male, age 61, right hemisphere
57.1
1863
Male, age 55, unknown
53.7
2787
Female, age 85, both hemispheres
53.0
Pontine raphe nucleus nTPM: 53.7
2122
Female, age 85, midline
58.8
2853
Male, age 76, midline
48.6
Posteroventral cochlear nucleus nTPM: 88.3
2135
Female, age 91, both hemispheres
133.4
2341
Male, age 80, both hemispheres
112.3
2070
Male, age 76, both hemispheres
80.5
2371
Male, age 61, both hemispheres
59.1
2752
Female, age 85, both hemispheres
56.0
Principal sensory trigeminal nucleus nTPM: 66.1
2367
Female, age 91, left hemisphere
102.3
2008
Male, age 80, left hemisphere
59.8
2324
Male, age 76, both hemispheres
59.3
2158
Male, age 61, both hemispheres
43.2
Reticular pontine nucleus, caudal nTPM: 79.2
2457
Female, age 91, both hemispheres
91.6
2559
Male, age 74, both hemispheres
88.4
2092
Male, age 76, both hemispheres
76.0
2332
Male, age 80, right hemisphere
60.7
Reticular pontine nucleus, oral nTPM: 89.4
2366
Female, age 91, both hemispheres
118.8
2361
Male, age 74, both hemispheres
98.9
2012
Female, age 85, both hemispheres
77.7
2167
Male, age 76, both hemispheres
77.7
1939
Male, age 80, both hemispheres
73.8
Reticulotegmental nucleus nTPM: 58.9
2322
Female, age 91, both hemispheres
67.0
2452
Male, age 74, both hemispheres
66.3
2333
Male, age 80, both hemispheres
57.7
2325
Male, age 76, both hemispheres
44.6
Spinal trigeminal nucleus, oral nTPM: 56.7
2164
Male, age 80, both hemispheres
66.2
1978
Male, age 76, both hemispheres
55.8
2737
Female, age 85, both hemispheres
48.1
Subcoeruleus area nTPM: 70.8
2369
Female, age 85, left hemisphere
108.3
1958
Male, age 80, both hemispheres
73.8
2089
Male, age 76, left hemisphere
70.6
2451
Male, age 74, both hemispheres
52.2
2323
Female, age 91, left hemisphere
49.2
Superior olive nTPM: 77.7
2020
Male, age 76, both hemispheres
84.0
2364
Male, age 74, right hemisphere
79.3
2561
Female, age 91, both hemispheres
79.2
2329
Male, age 80, right hemisphere
78.7
1875
Female, age 85, both hemispheres
67.2
Ventral periolivary nuclei nTPM: 70.0
2023
Male, age 76, both hemispheres
88.1
2794
Female, age 91, left hemisphere
73.5
2165
Male, age 80, both hemispheres
67.4
2130
Female, age 85, both hemispheres
50.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 80.8
2840
Female, age 85, both hemispheres
109.7
1959
Male, age 76, both hemispheres
82.1
2359
Male, age 61, both hemispheres
79.8
2161
Male, age 80, both hemispheres
76.0
2456
Female, age 91, both hemispheres
70.3
2449
Male, age 74, both hemispheres
67.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.5
Pig sample
Sample description
nTPM
Pons nTPM: 38.6
Samples: 4
Max nTPM: 43.7
Min nTPM: 28.1
Sample A
Female
28.1
Sample B
Female
42.6
Sample C
Male
39.8
Sample D
Male
43.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
