PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		33.240
Mouse brain, Intensity
Ponsi 		91.201
RNA expressioni
HPA Brain:110.6 nTPM
FANTOM5:128.4 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:27.0 nTPM
Allen mouse:0.4 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA058106
Medulla oblongata mean intensity 33.240
intensityi
FRONT BACK
Nucleus of the solitary tract 0.672
Raphe magnus nucleus 1.516
Cochlear nucleus 14.919
Lateral paragigantocellular nucleus 4.383
Raphe pallidus nucleus 33.240
Facial nucleus 10.833
Hypoglossal nucleus 2.533
Ambiguus nucleus 11.000
External cuneate nucleus 1.265
Inferior olivary nucleus 25.929
Raphe obscures nucleus 0.351
Dorsal motor nucleus of vagus 18.058
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 5.778
Parabrachial nucleus 0.851
Principle sensory trigeminal nucleus 6.220
Locus coeruleus 91.201
Pontine nucleus 5.103
Vestibular nucleus 0.580
Pontine reticular nucleus, oral 0.314
Lateral lemniscus 3.395
Superior paraolivary nucleus 25.870

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 110.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 84.6
2188 Female, age 91, both hemispheres 112.1
2090 Male, age 80, both hemispheres 93.4
2301 Female, age 85, both hemispheres 90.9
1984 Male, age 76, both hemispheres 41.9
Area postrema
nTPM: 65.3
2306 Male, age 80, both hemispheres 95.2
2054 Male, age 76, both hemispheres 52.8
2799 Male, age 61, both hemispheres 48.0
Dorsal cochlear nucleus
nTPM: 62.7
2187 Female, age 91, both hemispheres 79.6
2378 Male, age 80, both hemispheres 77.1
2802 Male, age 74, right hemisphere 57.2
2058 Male, age 76, both hemispheres 50.4
2370 Male, age 61, both hemispheres 49.0
Dorsal medullary reticular nucleus
nTPM: 67.9
2040 Female, age 85, both hemispheres 71.0
2088 Male, age 76, both hemispheres 70.0
2373 Male, age 61, both hemispheres 62.8
Dorsal motor vagal complex
nTPM: 52.0
2185 Male, age 76, both hemispheres 82.2
2807 Female, age 85, both hemispheres 71.0
2000 Male, age 74, unknown 54.5
2813 Female, age 72, unknown 52.4
2643 Male, age 74, both hemispheres 51.9
2133 Female, age 91, both hemispheres 48.7
2844 Male, age 55, unknown 29.0
2797 Male, age 61, both hemispheres 26.5
Dorsal tegmental nucleus
nTPM: 60.5
2083 Male, age 80, both hemispheres 75.1
2326 Male, age 74, both hemispheres 62.7
1936 Male, age 76, left hemisphere 54.7
2358 Male, age 61, both hemispheres 49.6
Dorsolateral tegmental area
nTPM: 69.6
2337 Male, age 61, both hemispheres 94.2
2751 Female, age 85, both hemispheres 92.6
2654 Male, age 80, both hemispheres 70.9
2360 Male, age 74, both hemispheres 46.2
2141 Male, age 76, both hemispheres 44.1
Gigantocellular reticular nuclei, medullary
nTPM: 73.3
2314 Male, age 61, both hemispheres 100.9
1876 Female, age 85, both hemispheres 87.0
2387 Female, age 91, both hemispheres 79.5
2022 Male, age 76, right hemisphere 65.8
2310 Male, age 80, both hemispheres 62.0
2462 Male, age 74, both hemispheres 44.4
Gigantocellular reticular nuclei, pars
nTPM: 73.1
2336 Male, age 61, both hemispheres 84.5
2706 Male, age 80, both hemispheres 81.6
2330 Male, age 80, both hemispheres 78.6
2084 Female, age 85, both hemispheres 63.9
2168 Male, age 76, both hemispheres 57.1
Inferior olive
nTPM: 82.8
2178 Male, age 61, both hemispheres 103.3
2628 Female, age 91, both hemispheres 87.6
2379 Male, age 80, both hemispheres 82.7
2085 Female, age 85, both hemispheres 73.1
2563 Male, age 74, both hemispheres 67.6
Kolliker-Fuse nucleus
nTPM: 86.3
2793 Female, age 91, left hemisphere 126.9
2163 Male, age 80, both hemispheres 66.1
2315 Male, age 76, right hemisphere 65.9
Lateral lemniscal nuclei
nTPM: 75.8
2320 Female, age 91, left hemisphere 93.0
2746 Female, age 85, left hemisphere 89.7
2036 Male, age 80, both hemispheres 66.5
2453 Male, age 74, right hemisphere 65.6
2169 Male, age 76, both hemispheres 64.1
Lateral medullary reticular nucleus
nTPM: 83.8
2852 Male, age 80, both hemispheres 100.6
2305 Male, age 74, both hemispheres 98.0
2374 Male, age 61, both hemispheres 91.9
2190 Female, age 85, both hemispheres 83.5
2044 Male, age 76, both hemispheres 67.0
2804 Female, age 91, both hemispheres 61.9
Lateral parabrachial nucleus
nTPM: 77.6
2792 Male, age 76, both hemispheres 109.8
2013 Male, age 80, both hemispheres 83.8
2790 Male, age 61, both hemispheres 60.6
2139 Female, age 85, right hemisphere 56.1
Lateral vestibular nucleus
nTPM: 67.0
2311 Male, age 80, both hemispheres 72.6
2184 Male, age 76, both hemispheres 61.3
Locus coeruleus
nTPM: 42.5
2720 Male, age 74, both hemispheres 55.7
2162 Male, age 80, both hemispheres 52.2
2788 Male, age 74, unknown 47.1
2317 Female, age 72, unknown 37.1
2123 Female, age 91, both hemispheres 36.5
2014 Male, age 55, unknown 35.8
1980 Male, age 76, both hemispheres 33.3
Medial olivary nucleus
nTPM: 110.6
1943 Male, age 61, both hemispheres 141.4
1962 Male, age 76, both hemispheres 121.0
2851 Male, age 80, both hemispheres 104.8
2138 Female, age 91, both hemispheres 75.0
Medial parabrachial nucleus
nTPM: 70.8
2854 Male, age 80, both hemispheres 91.2
2170 Female, age 91, both hemispheres 74.0
2786 Male, age 76, both hemispheres 70.8
2463 Female, age 85, right hemisphere 69.0
2156 Male, age 61, both hemispheres 48.9
Medial periolivary nuclei
nTPM: 72.5
2081 Male, age 80, both hemispheres 97.0
2458 Female, age 91, both hemispheres 86.3
2791 Male, age 74, right hemisphere 71.2
2171 Female, age 85, both hemispheres 54.7
2063 Male, age 76, both hemispheres 53.2
Medial vestibular nucleus
nTPM: 62.4
2803 Female, age 91, both hemispheres 79.9
2801 Male, age 74, both hemispheres 74.1
2093 Male, age 80, both hemispheres 68.2
2624 Male, age 61, both hemispheres 65.3
2743 Female, age 85, both hemispheres 46.3
2134 Male, age 76, both hemispheres 40.8
Motor facial nucleus
nTPM: 72.1
2697 Female, age 85, both hemispheres 111.9
2365 Male, age 74, right hemisphere 79.5
2126 Male, age 61, both hemispheres 73.7
2795 Female, age 91, both hemispheres 62.6
2327 Male, age 80, both hemispheres 59.9
2062 Male, age 76, both hemispheres 45.1
Motor hypoglossal nucleus
nTPM: 67.1
2182 Male, age 80, both hemispheres 84.6
2132 Female, age 85, both hemispheres 82.7
2125 Female, age 91, both hemispheres 68.9
2461 Male, age 61, both hemispheres 55.6
2277 Male, age 76, both hemispheres 43.5
Motor trigeminal nucleus
nTPM: 70.4
2321 Female, age 91, both hemispheres 81.9
2560 Male, age 74, both hemispheres 75.9
2079 Male, age 80, both hemispheres 73.5
2309 Male, age 76, both hemispheres 64.3
2335 Male, age 61, both hemispheres 56.4
Nuclei of the trapezoid body
nTPM: 61.8
2166 Male, age 80, both hemispheres 85.2
2368 Female, age 91, both hemispheres 69.5
2159 Male, age 61, both hemispheres 59.8
1983 Male, age 76, both hemispheres 51.8
2735 Female, age 85, both hemispheres 42.7
Nucleus ambiguus
nTPM: 65.8
2071 Male, age 76, both hemispheres 85.1
2096 Female, age 85, both hemispheres 46.5
Nucleus cuneatus
nTPM: 74.4
2380 Male, age 80, both hemispheres 111.2
2808 Female, age 85, both hemispheres 100.2
2381 Male, age 80, both hemispheres 96.3
2131 Male, age 76, both hemispheres 71.9
2100 Male, age 76, both hemispheres 70.7
2805 Female, age 91, both hemispheres 64.6
2376 Male, age 61, both hemispheres 63.9
2564 Male, age 74, both hemispheres 54.9
2562 Male, age 61, both hemispheres 36.1
Nucleus gracilis
nTPM: 98.2
2382 Male, age 80, both hemispheres 128.0
2299 Female, age 85, both hemispheres 86.4
2627 Male, age 74, both hemispheres 80.2
Nucleus raphe magnus
nTPM: 64.0
2051 Male, age 76, both hemispheres 83.4
2459 Female, age 91, both hemispheres 80.7
2328 Male, age 80, both hemispheres 74.4
2455 Male, age 74, both hemispheres 62.4
2172 Female, age 85, both hemispheres 44.0
2160 Male, age 61, both hemispheres 39.4
Nucleus raphe obscurus
nTPM: 95.1
2845 Female, age 85, midline 109.0
2142 Male, age 76, midline 97.0
2800 Male, age 61, midline 79.2
Nucleus raphe pallidus
nTPM: 101.9
2145 Male, age 76, midline 127.0
1924 Male, age 61, midline 97.9
2183 Male, age 80, midline 80.7
Nucleus tractus solitarii
nTPM: 43.2
2656 Male, age 76, both hemispheres 46.9
2307 Male, age 80, both hemispheres 43.9
2191 Female, age 85, both hemispheres 43.1
2144 Female, age 91, right hemisphere 38.9
Paramedian reticular nucleus
nTPM: 73.5
2052 Male, age 76, both hemispheres 99.5
2050 Female, age 85, both hemispheres 74.9
2057 Male, age 80, both hemispheres 61.6
2313 Male, age 61, both hemispheres 58.1
Parvicellular reticular nuclei
nTPM: 71.9
2095 Male, age 76, both hemispheres 79.7
2119 Male, age 80, both hemispheres 72.6
2558 Male, age 74, both hemispheres 63.3
Parvicellular reticular nuclei, medullary
nTPM: 58.9
2189 Female, age 91, both hemispheres 63.0
2091 Female, age 85, both hemispheres 58.7
2181 Male, age 80, left hemisphere 55.0
Pedunculopontine tegmental nucleus
nTPM: 68.3
2338 Male, age 61, both hemispheres 85.7
2334 Male, age 80, both hemispheres 64.7
1921 Female, age 85, both hemispheres 54.6
Peritrigeminal nucleus
nTPM: 64.4
2136 Male, age 76, both hemispheres 66.1
2179 Male, age 61, both hemispheres 65.7
2067 Female, age 85, both hemispheres 61.5
Pontine nuclei
nTPM: 78.0
2454 Male, age 74, left hemisphere 108.3
2319 Female, age 91, both hemispheres 106.0
2115 Male, age 80, left hemisphere 99.2
2109 Female, age 72, unknown 80.1
1968 Male, age 76, left hemisphere 66.7
2727 Male, age 61, right hemisphere 57.1
1863 Male, age 55, unknown 53.7
2787 Female, age 85, both hemispheres 53.0
Pontine raphe nucleus
nTPM: 53.7
2122 Female, age 85, midline 58.8
2853 Male, age 76, midline 48.6
Posteroventral cochlear nucleus
nTPM: 88.3
2135 Female, age 91, both hemispheres 133.4
2341 Male, age 80, both hemispheres 112.3
2070 Male, age 76, both hemispheres 80.5
2371 Male, age 61, both hemispheres 59.1
2752 Female, age 85, both hemispheres 56.0
Prepositus hypoglossal nucleus
nTPM: 62.5
2855 Female, age 85, right hemisphere 75.4
2086 Male, age 80, both hemispheres 49.6
Principal sensory trigeminal nucleus
nTPM: 66.1
2367 Female, age 91, left hemisphere 102.3
2008 Male, age 80, left hemisphere 59.8
2324 Male, age 76, both hemispheres 59.3
2158 Male, age 61, both hemispheres 43.2
Reticular pontine nucleus, caudal
nTPM: 79.2
2457 Female, age 91, both hemispheres 91.6
2559 Male, age 74, both hemispheres 88.4
2092 Male, age 76, both hemispheres 76.0
2332 Male, age 80, right hemisphere 60.7
Reticular pontine nucleus, oral
nTPM: 89.4
2366 Female, age 91, both hemispheres 118.8
2361 Male, age 74, both hemispheres 98.9
2012 Female, age 85, both hemispheres 77.7
2167 Male, age 76, both hemispheres 77.7
1939 Male, age 80, both hemispheres 73.8
Reticulotegmental nucleus
nTPM: 58.9
2322 Female, age 91, both hemispheres 67.0
2452 Male, age 74, both hemispheres 66.3
2333 Male, age 80, both hemispheres 57.7
2325 Male, age 76, both hemispheres 44.6
Spinal trigeminal nucleus, caudal
nTPM: 71.6
2312 Male, age 61, both hemispheres 96.2
2308 Male, age 80, both hemispheres 72.7
2642 Male, age 74, both hemispheres 65.8
2390 Female, age 91, both hemispheres 62.3
2447 Male, age 76, both hemispheres 60.9
Spinal trigeminal nucleus, interpolar
nTPM: 60.7
2033 Male, age 80, both hemispheres 69.8
2386 Female, age 85, both hemispheres 68.0
2389 Female, age 91, both hemispheres 67.3
2625 Male, age 61, both hemispheres 49.8
2066 Male, age 76, right hemisphere 48.6
Spinal trigeminal nucleus, oral
nTPM: 56.7
2164 Male, age 80, both hemispheres 66.2
1978 Male, age 76, both hemispheres 55.8
2737 Female, age 85, both hemispheres 48.1
Spinal vestibular nucleus
nTPM: 69.3
2806 Female, age 85, both hemispheres 84.8
2748 Male, age 76, both hemispheres 74.3
2186 Female, age 91, both hemispheres 71.9
2384 Male, age 74, both hemispheres 70.3
2780 Male, age 80, both hemispheres 57.7
2796 Male, age 61, both hemispheres 56.9
Subcoeruleus area
nTPM: 70.8
2369 Female, age 85, left hemisphere 108.3
1958 Male, age 80, both hemispheres 73.8
2089 Male, age 76, left hemisphere 70.6
2451 Male, age 74, both hemispheres 52.2
2323 Female, age 91, left hemisphere 49.2
Superior olive
nTPM: 77.7
2020 Male, age 76, both hemispheres 84.0
2364 Male, age 74, right hemisphere 79.3
2561 Female, age 91, both hemispheres 79.2
2329 Male, age 80, right hemisphere 78.7
1875 Female, age 85, both hemispheres 67.2
Superior vestibular nucleus
nTPM: 56.2
2015 Male, age 80, both hemispheres 60.8
2383 Male, age 74, both hemispheres 58.5
2061 Male, age 76, both hemispheres 49.2
Ventral medullary reticular nucleus
nTPM: 70.9
2372 Male, age 61, both hemispheres 73.6
2060 Male, age 76, both hemispheres 68.1
Ventral periolivary nuclei
nTPM: 70.0
2023 Male, age 76, both hemispheres 88.1
2794 Female, age 91, left hemisphere 73.5
2165 Male, age 80, both hemispheres 67.4
2130 Female, age 85, both hemispheres 50.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 75.4
2118 Male, age 80, both hemispheres 93.1
2180 Male, age 61, both hemispheres 88.4
1986 Male, age 76, both hemispheres 69.2
2741 Female, age 85, both hemispheres 63.8
2302 Female, age 91, both hemispheres 62.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 80.8
2840 Female, age 85, both hemispheres 109.7
1959 Male, age 76, both hemispheres 82.1
2359 Male, age 61, both hemispheres 79.8
2161 Male, age 80, both hemispheres 76.0
2456 Female, age 91, both hemispheres 70.3
2449 Male, age 74, both hemispheres 67.1

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 128.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 89.8
FF:10165-103B3 76 years, female 105.6
FF:10182-103D2 60 years, female 74.0
Medulla oblongata
Scaled Tags Per Million: 85.3
FF:10155-103A2 76 years, female 109.6
FF:10038-101F2 18-64 years, mixed 80.3
FF:10174-103C3 60 years, female 66.0
Pons
Scaled Tags Per Million: 128.4
FF:10033-101E6 18-54 years, mixed 128.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 54.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 54.4
Samples: 4

Max nTPM: 62.8
Min nTPM: 44.0
Sample A Female 60.0
Sample B Female 44.0
Sample C Male 50.8
Sample D Male 62.8
Pons
nTPM: 38.6
Samples: 4

Max nTPM: 43.7
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 42.6
Sample C Male 39.8
Sample D Male 43.7

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 27.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 27.1
Samples: 4

Max nTPM: 29.1
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 28.3
Sample C Female 25.7
Sample D Female 29.1

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.4
70238925 Antisense, RP_050526_04_D05, Mouse strain C57BL/6J (56 days, male) 0.7
74047443 Antisense, RP_051214_01_G05, Mouse strain C57BL/6J (56 days, male) 0.7
71213117 Antisense, RP_050816_03_H08, Mouse strain C57BL/6J (56 days, male) 0.2
71147924 Antisense, RP_050719_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 0.4
74047443 Antisense, RP_051214_01_G05, Mouse strain C57BL/6J (56 days, male) 0.9
70238925 Antisense, RP_050526_04_D05, Mouse strain C57BL/6J (56 days, male) 0.7
71213117 Antisense, RP_050816_03_H08, Mouse strain C57BL/6J (56 days, male) 0.1
71147924 Antisense, RP_050719_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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