BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.5 nTPM
HPA Brain:132.9 nTPM
GTEx:127.5 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:363.6 nTPM
Allen mouse:14.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 132.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 92.6
2481 Female, age 94, left hemisphere 113.6
1857 Female, age 85, left hemisphere 111.9
1854 Male, age 80, left hemisphere 97.9
2290 Female, age 72, unknown 94.4
2288 Male, age 75, left hemisphere 93.6
2289 Male, age 61, right hemisphere 80.7
1781 Male, age 74, unknown 77.8
2846 Female, age 79, unknown 70.9
Globus pallidus, externus
nTPM: 132.9
2646 Male, age 61, right hemisphere 179.1
1996 Male, age 80, right hemisphere 175.2
2772 Female, age 79, unknown 137.3
2395 Male, age 75, both hemispheres 105.4
2567 Female, age 72, unknown 67.4
Globus pallidus, internus
nTPM: 113.1
2037 Male, age 80, right hemisphere 163.3
2483 Female, age 94, right hemisphere 148.7
1818 Male, age 74, unknown 134.8
2287 Male, age 75, right hemisphere 129.8
2778 Female, age 91, both hemispheres 89.2
2111 Female, age 85, right hemisphere 66.2
2566 Female, age 72, unknown 59.7
Nucleus accumbens
nTPM: 94.3
2286 Male, age 75, left hemisphere 125.4
1806 Female, age 85, left hemisphere 111.9
2732 Male, age 80, right hemisphere 101.4
2698 Female, age 72, unknown 96.7
2391 Female, age 94, left hemisphere 88.3
1856 Female, age 91, right hemisphere 87.3
2824 Male, age 61, right hemisphere 72.2
1783 Male, age 74, unknown 71.4
Nucleus basalis of Meynert
nTPM: 101.7
2569 Male, age 61, both hemispheres 181.4
2393 Male, age 80, right hemisphere 85.6
2484 Female, age 94, left hemisphere 76.4
2821 Male, age 75, both hemispheres 63.3
Nucleus of the diagonal band
nTPM: 108.3
1812 Female, age 91, both hemispheres 118.8
2775 Male, age 80, right hemisphere 117.6
2195 Female, age 85, both hemispheres 115.8
1979 Male, age 74, unknown 97.0
2029 Male, age 61, right hemisphere 92.3
Putamen
nTPM: 76.5
2482 Female, age 94, left hemisphere 95.6
1838 Male, age 80, right hemisphere 91.5
1829 Male, age 74, unknown 79.6
1937 Female, age 91, right hemisphere 74.6
2466 Female, age 79, unknown 71.1
2489 Female, age 72, unknown 65.5
2647 Male, age 75, left hemisphere 57.9
Septal nuclei
nTPM: 114.5
2059 Female, age 85, both hemispheres 143.5
2199 Male, age 80, right hemisphere 132.5
2031 Female, age 72, unknown 128.1
1960 Male, age 74, unknown 104.8
2009 Female, age 91, both hemispheres 102.2
2394 Male, age 61, left hemisphere 95.5
2629 Female, age 94, right hemisphere 94.5
Stria terminalis, bed nucleus
nTPM: 92.4
2201 Male, age 74, unknown 102.4
2486 Female, age 94, both hemispheres 87.8
1974 Female, age 91, both hemispheres 86.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 127.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 114.3
Samples: 246

Max nTPM: 296.5
Min nTPM: 18.7
Std nTPM: 39.8
Median nTPM: 108.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 296.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 240.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 223.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 222.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 222.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 207.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 203.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 196.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 196.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 195.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 191.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 127.5
Samples: 246

Max nTPM: 419.7
Min nTPM: 32.2
Std nTPM: 53.9
Median nTPM: 112.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 419.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 358.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 313.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 292.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 273.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 266.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 266.0
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 254.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 238.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 235.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 231.8
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Brain - Putamen (basal ganglia)
Average nTPM: 121.5
Samples: 205

Max nTPM: 331.1
Min nTPM: 31.2
Std nTPM: 48.0
Median nTPM: 113.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 331.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 253.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 241.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 230.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 229.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 215.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 210.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 207.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 205.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 204.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 201.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.0
FF:10164-103B2 76 years, female 132.0
Nucleus accumbens
Scaled Tags Per Million: 123.3
FF:10037-101F1 23-56 years, mixed 123.3
Putamen
Scaled Tags Per Million: 131.6
FF:10176-103C5 60 years, female 131.6
Globus pallidus
Scaled Tags Per Million: 121.0
FF:10175-103C4 60 years, female 126.3
FF:10161-103A8 76 years, female 115.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 63.0
Pig sample Sample description nTPM
Caudate
nTPM: 45.2
Samples: 4

Max nTPM: 54.0
Min nTPM: 33.7
Sample A Female 33.7
Sample B Female 49.4
Sample C Male 54.0
Sample D Male 43.7
Putamen
nTPM: 63.0
Samples: 4

Max nTPM: 81.0
Min nTPM: 43.8
Sample A Female 73.9
Sample B Female 43.8
Sample C Male 81.0
Sample D Male 53.4
Septum
nTPM: 48.2
Samples: 4

Max nTPM: 63.1
Min nTPM: 36.0
Sample A Female 50.7
Sample B Female 43.0
Sample C Male 63.1
Sample D Male 36.0
Ventral pallidum
nTPM: 56.0
Samples: 4

Max nTPM: 100.1
Min nTPM: 34.7
Sample A Female 34.7
Sample B Female 49.8
Sample C Male 100.1
Sample D Male 39.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 363.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 362.4
Samples: 4

Max nTPM: 381.3
Min nTPM: 328.0
Sample A Male 365.3
Sample B Male 375.1
Sample C Female 328.0
Sample D Female 381.3
Septum
nTPM: 363.6
Samples: 4

Max nTPM: 411.0
Min nTPM: 323.5
Sample A Male 323.5
Sample B Male 411.0
Sample C Female 366.7
Sample D Female 353.3
Ventral forebrain
nTPM: 290.3
Samples: 4

Max nTPM: 332.2
Min nTPM: 265.7
Sample A Male 267.9
Sample B Male 332.2
Sample C Female 295.4
Sample D Female 265.7

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 14.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.2
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 16.1
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 12.3
Pallidum
Expression energy: 11.6
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 13.6
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 9.5

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